Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01649 ATGGTTGATCAGGTCCAACATCCTACAATCATGGACAAGGTGGCTGGCCAACTCCATCTTCGATCTGGTCTTTCATCTGGTATAAAGAGTTATGATGGAGCCTTCCGCCACCCTGCTATGTACCAAAGGCCCTCATTTGGGAATTACTCGAATGCTGCATTGCAGTATCCAGTAATGCCCACTTGCAAAACTACTATGGATTTGTCTGCTGCAACAACAACCTCCCCTGTTTTTGCTGCGGCACCAGCAGAGAAGGGCCATTTTCTTATAGACTTTCTCATGGGAGGTGTTTCAGCAGCTGTCTCCAAAACTGCTGCTGCTCCCATTGAACGTGTTAAGCTCCTGATCCAGAACCAGGATGAGATGATCAAAACTGGAAGGCTCTCTGAGCCATACAAGGGTATTGGTGATTGCTTTAAGAGAACAATGCAGGATGAGGGTGTTGTTTCTTTATGGAGAGGAAACACAGCCAATGTCATTCGTTATTTCCCCACCCAGGCTTTGAACTTTGCATTTAAGGACTACTTCAAGAGGCTTTTCAATTTCAAGAAGGACAGGGATGGCTACTGGAAATGGTTTGCTGGCAATTTGGCCTCTGGAGGTGCTGCTGGTGCATCATCCCTTTTGTTTGTTTATTCTCTTGACTATGCCCGTACCCGTCTTGCCAATGATGCTAAGGCTGCAAAGAAGGGTGGAGAAAGACAATTCAATGGTCTTGTGGATGTCTACAGGAAGACATTGGCATCTGATGGTGTTGCTGGACTTTACCGTGGTTTCAACATCTCGTGTGTTGGAATCATCGTGTATCGTGGTCTGTACTTTGGAATGTACGATTCCTTGAAACCAGTGGTCTTGACTGGATCATTGCAGGATAGCTTTTTCGCTAGCTTTGCCCTAGGGTGGCTCATCACCAATGGTGCAGGTCTAGCATCATACCCAATTGACACTGTTAGAAGAAGAATGATGATGACCTCTGGTGAAGCTGTTAAGTACAAGAGTTCTTTGGATGCATTTGCACAAATCCTCAAGAATGAGGGTGCCAAATCCCTGTTCAAGGGTGCAGGTGCTAACATCCTCCgtgccgttgctggtgctggtgtgcttgctggGTACGACAAGTTGCAGGTGCTTGTGTTTGGCAAGAAATATGGTTCTGGTGGTGCTTAA 1167 0.4482 MVDQVQHPTIMDKVAGQLHLRSGLSSGIKSYDGAFRHPAMYQRPSFGNYSNAALQYPVMPTCKTTMDLSAATTTSPVFAAAPAEKGHFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFKRTMQDEGVVSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGSLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFAQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVLVFGKKYGSGGA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01649 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 291 377 IPR018108 -
Cca10g01649 388 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 388 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g01649 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 86 179 IPR018108 -
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 91 104 IPR002067 GO:0055085
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 104 118 IPR002067 GO:0055085
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 154 174 IPR002067 GO:0055085
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 206 224 IPR002067 GO:0055085
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 256 274 IPR002067 GO:0055085
Cca10g01649 388 PRINTS Mitochondrial carrier protein signature 300 322 IPR002067 GO:0055085
Cca10g01649 388 Pfam Mitochondrial carrier protein 87 183 IPR018108 -
Cca10g01649 388 Pfam Mitochondrial carrier protein 292 379 IPR018108 -
Cca10g01649 388 Pfam Mitochondrial carrier protein 190 285 IPR018108 -
Cca10g01649 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 191 283 IPR018108 -
Cca10g01649 388 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 2 388 - -
Cca10g01649 388 SUPERFAMILY Mitochondrial carrier 87 373 IPR023395 -
Cca10g01649 388 Gene3D Mitochondrial carrier domain 89 384 IPR023395 -
Cca10g01649 388 PRINTS Adenine nucleotide translocator signature 88 100 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g01649 388 PRINTS Adenine nucleotide translocator signature 132 153 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g01649 388 PRINTS Adenine nucleotide translocator signature 165 177 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g01649 388 PRINTS Adenine nucleotide translocator signature 191 204 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cca10g01649 388 PRINTS Adenine nucleotide translocator signature 296 312 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01649 Cca-Chr10 28807719 28811515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01649 1 388 Antiporters AT5G13490 81.378 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01649 K05863 - gmx:100789942 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01649 10 28807719 28811515 Cca04g01917 04 37078384 37081698 ECH
Cca10g01649 10 28807719 28811515 Cca10g01649 10 28807719 28811515 ECH