Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01646 atGTTTCTCATTGGTTTGCAGATGCATATGTGGGGACATGGATCTCAATATAGGAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACTCTTCAAACACATTACAAGAGAAAACATGGTGTGAAACCCTACAGGTGCAGAAAGTGTGACAAAGCGTTTGCAGTGAAAGGTGATTGGCGGACACATGAGAAAAACTGTGGCAAAATATGGTACTGTTTATGTGGATCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGAGCTATTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGATGAACATGATAGGGATAGCTCAATGTGA 459 0.4336 MFLIGLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYRCRKCDKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAIDIDCMQEDEAASEIDEHDRDSSM 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01646 152 SUPERFAMILY beta-beta-alpha zinc fingers 60 95 IPR036236 -
Cca10g01646 152 Gene3D Classic Zinc Finger 54 133 - -
Cca10g01646 152 PANTHER ZINC FINGER PROTEIN WIP2 6 149 - -
Cca10g01646 152 PANTHER ZINC FINGER PROTEIN WIP2 6 149 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01646 Cca-Chr10 28667221 28667912 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01646 6 149 C2H2 Transcription Factor Family AT3G57670 80.000 1.68e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01646 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01646 - - ccaj:109809866 341.658