Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01645 ATGACAGATCCTCAGTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTCTATTCTCACCACTCTTCTTTCACTTCTCAATCAAACCTATTCTCTTCCTACCCTCTTGGAAACTTAAACAACACCGACACTTTTTCCATTCAATCCGAAACCTCTTCCTCTTGTGCAGCTCCTCCTAACTCCCCTCCTCGCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCACACAAAAGAAGGAAAATAATGAACCCTCAAACAGTGGTGGAGAAGTTGAAGAGGAAGGACAGAAGAAAAGGGACAAAGATGAGAGTCTTTTGACTAGTACTAATAAAGATGTTGATGATGAAACTGTGACAGTAGCACTGCGCATAGGGCCTCCTAGCATGGATCATGCTTCTGATCTTATGGGATCAAGGAAGATCTCAACTTGTGCTGAAATGGGTGAAAAGGGTGAAGTGAGTGAGATTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGTCCTACTCAGTTTTTATGTTCTGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGGTATGCAATATGTTATTGTAA 627 0.4179 MTDPQSNLYAGTFNFMPLYSHHSSFTSQSNLFSSYPLGNLNNTDTFSIQSETSSSCAAPPNSPPRREALPLINNISLTQKKENNEPSNSGGEVEEEGQKKRDKDESLLTSTNKDVDDETVTVALRIGPPSMDHASDLMGSRKISTCAEMGEKGEVSEISGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQVCNMLL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01645 208 PANTHER ZINC FINGER PROTEIN WIP2 1 203 IPR043584 GO:0003700|GO:0010468
Cca10g01645 208 MobiDBLite consensus disorder prediction 92 112 - -
Cca10g01645 208 MobiDBLite consensus disorder prediction 76 114 - -
Cca10g01645 208 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01645 Cca-Chr10 28658238 28659921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01645 60 203 C2H2 Transcription Factor Family AT3G20880 37.342 5.54e-18 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01645 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01645 - - gmx:100789060 271.552