Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01644 ATGCTTGCAATATATTTATATACCACTCTAACTACTGGCCAAAGATCCAAAACCATCTCAGCCTTCACTATGACAGATCCTCAGTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTCTATTCTCACCACTCTTCTTTCACTTCTCAATCAAACCTATTCTCTTCCTACCCTCTTGGAAACTTAAACAACACCGACACTTTTTCCATTCAATCCGAAACCTCTTCCTCTTGTGCAGCTCCTCCTAACTCCCCTCCTCGCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCACACAAAAGAAGGAAAATAATGAACCCTCAAACAGTGGTGGAGAAGTTGAAGAGGAAGGACAGAAGAAAAGGGACAAAGATGAGAGTCTTTTGACTAGTACTAATAAAGATGTTGATGATGAAACTGTGACAGTAGCACTGCGCATAGGGCCTCCTAGCATGGATCATGCTTCTGATCTTATGGGATCAAGGAAGATCTCAACTTGTGCTGAAATGGGTGAAAAGGGTGAAGTGAGTGAGATTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGTCCTACTCAGTTTTTATGTTCTGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGGAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACTCTTCAAACACATTACAAGAGAAAACATGGTGTGAAACCCTACAGGTGCAGAAAGTGTGACAAAGCGTTTGCAGTGAAAGGTGATTGGCGGACACATGAGAAAAACTGTGGCAAAATATGGTACTGTTTATGTGGATCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGAGCTATTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGATGAACATGATAGGGATAGCTCAATGTGA 1113 0.4259 MLAIYLYTTLTTGQRSKTISAFTMTDPQSNLYAGTFNFMPLYSHHSSFTSQSNLFSSYPLGNLNNTDTFSIQSETSSSCAAPPNSPPRREALPLINNISLTQKKENNEPSNSGGEVEEEGQKKRDKDESLLTSTNKDVDDETVTVALRIGPPSMDHASDLMGSRKISTCAEMGEKGEVSEISGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYRCRKCDKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAIDIDCMQEDEAASEIDEHDRDSSM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01644 370 SUPERFAMILY beta-beta-alpha zinc fingers 202 231 IPR036236 -
Cca10g01644 370 MobiDBLite consensus disorder prediction 115 135 - -
Cca10g01644 370 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 24 362 - -
Cca10g01644 370 Gene3D Classic Zinc Finger 208 231 - -
Cca10g01644 370 MobiDBLite consensus disorder prediction 99 137 - -
Cca10g01644 370 PANTHER ZINC FINGER PROTEIN WIP2 24 362 IPR043584 GO:0003700|GO:0010468
Cca10g01644 370 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Cca10g01644 370 Gene3D Classic Zinc Finger 291 365 - -
Cca10g01644 370 SMART c2h2final6 209 231 IPR013087 -
Cca10g01644 370 SMART c2h2final6 293 313 IPR013087 -
Cca10g01644 370 SMART c2h2final6 319 342 IPR013087 -
Cca10g01644 370 SUPERFAMILY beta-beta-alpha zinc fingers 277 313 IPR036236 -
Cca10g01644 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01644 Cca-Chr10 28554961 28557592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01644 143 367 C2H2 Transcription Factor Family AT3G57670 64.314 1.54e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g01644 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01644 - - gmx:100818131 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01644 10 28554961 28557592 Cca10g01644 10 28554961 28557592 ECH