Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01641 ATGTCCAACAGGGTTTGCAAGTTCTATGCGCGAGGGTCATGTTTGAAAGGGGACCAATGTGATTTTGCTCATGAGAGAAAGGATGATGTTTGCAGCTATTATCAAAAAGGATTCTGTGCTTATGGTAGTAGATGCAGATATAGGCATGTCAAAGCTTCGCAAGCGTCATCTTCGGCAAATGGTCATGGACGCCATTCTCCTGTTTTGGATTCTGTTGTGAGTCATACTGCCAAAGGAACTTCAAGTTGGGTTCCAAAGGCCGTTAAGTCATCTTCCCCGGACAAGCATGTAAGGAGTTCACAACAAAAGAATCTGTCCGCTCACGGGAATGATGTTGGTGAATCCAGTAATAGTAGCGCTGTACCATCTGAATATTTGTTTTGTGCATATGCTGCTGCCAACTGCCCCCTTGAAGATAAATGTTCTCGCATTCATGGAAATCAATGTTTATACTGTAGAAAATTTTGCTTACATCCTACTGATCGAAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGATAAATACCTTCAGGCTCTGAAAGATAGTCAAGAAGTAGAATGCAATGTTTGTTTGGAGCGTGTTCTTTCCAAACCTAAACCATCTGATTGCAAGTTTGGGTTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCACAAACTCTGGAATGGACATCAACAATACTGCTAATACAGTGAGAACCTGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAGGAAATTATTGACAATTACAAAGCAAACTGCAAACTAATTGATTGCAAGCATTTTAACTTCGGAAATGGGAATTGTCCATTTGGGGCTAGTTGTTTCTACAAGCATACAGTGAAGCCTGGCTCTTACACATGGATACATCACAGGCCACCACCTCAACGTAGACAAAACAATTTTGGTATGTATGACATGTTGGACATGCTCAGCGAGGTGGATTTATCAAGTGCAGAATATTATTCCATCATGAGGGAGTCAGAGTTTTTTGATGATATGGATCCATTTGAGATGATGGATATATCTGATAGGCTTGCTGGTGAATCAGGTCCTTGTTTGGGTCCTTTTGATTCTGATGAGGAGGACATGGATTTTTTTCAGATGGCTGCATTGTCAGAAGCATTGGTTTCTGGTGTAGATGATTTTGGTCCTGAAGATTTTGATGAAGAATTCAATCCTATGGAGGCCGCCTTGTTATCAATGATGATGCATTCTAATATAGAAGACGAGGATGAAGAAGATTACAGTGATGAAGACTTCTAG 1347 0.4031 MSNRVCKFYARGSCLKGDQCDFAHERKDDVCSYYQKGFCAYGSRCRYRHVKASQASSSANGHGRHSPVLDSVVSHTAKGTSSWVPKAVKSSSPDKHVRSSQQKNLSAHGNDVGESSNSSAVPSEYLFCAYAAANCPLEDKCSRIHGNQCLYCRKFCLHPTDRKEKENHLRTCEKKDKYLQALKDSQEVECNVCLERVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSATNSGMDINNTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFNFGNGNCPFGASCFYKHTVKPGSYTWIHHRPPPQRRQNNFGMYDMLDMLSEVDLSSAEYYSIMRESEFFDDMDPFEMMDISDRLAGESGPCLGPFDSDEEDMDFFQMAALSEALVSGVDDFGPEDFDEEFNPMEAALLSMMMHSNIEDEDEEDYSDEDF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01641 448 ProSiteProfiles Zinc finger RING-type profile. 190 251 IPR001841 -
Cca10g01641 448 Gene3D - 1 27 - -
Cca10g01641 448 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Cca10g01641 448 SUPERFAMILY RING/U-box 180 257 - -
Cca10g01641 448 SUPERFAMILY CCCH zinc finger 25 49 IPR036855 GO:0046872
Cca10g01641 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 29 50 IPR000571 GO:0046872
Cca10g01641 448 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Cca10g01641 448 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Cca10g01641 448 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 447 - -
Cca10g01641 448 ProSiteProfiles Zinc finger C3H1-type profile. 280 309 IPR000571 GO:0046872
Cca10g01641 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 256 IPR013083 -
Cca10g01641 448 MobiDBLite consensus disorder prediction 80 117 - -
Cca10g01641 448 CDD RING-HC_MKRN 190 251 - -
Cca10g01641 448 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Cca10g01641 448 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Cca10g01641 448 SMART c3hfinal6 27 51 IPR000571 GO:0046872
Cca10g01641 448 SMART c3hfinal6 124 147 IPR000571 GO:0046872
Cca10g01641 448 SMART c3hfinal6 280 308 IPR000571 GO:0046872
Cca10g01641 448 Pfam Zinc finger, C3HC4 type (RING finger) 190 250 IPR018957 GO:0046872
Cca10g01641 448 Gene3D - 28 155 - -
Cca10g01641 448 PANTHER MAKORIN-RELATED 1 447 IPR045072 -
Cca10g01641 448 SMART ring_2 190 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01641 Cca-Chr10 28516227 28524662 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca10g01641 zf-C3HC4 8.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01641 K15687 - gmx:100788886 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01641 10 28516227 28524662 Cca10g01641 10 28516227 28524662 ECH