Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01639 ATGTCTAGGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGCGAATTTTCTCACGACTGGAAAGATCCTCCAAATAATATATGCACGTTTTACCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGACATCTTCCACTCCATCTTCTTCAGTAATCGAACACCAGACCCTGGTTTCAGATGCTGTGGCTTTTGGAGATACTAGAACTACATCGAATGGTGTTGCTGCAGCTGCTGAGTTTTCTCTTTCCAGGAGTCCTTACCTTCTTCCTAGTGAACCGGCTTGGAATCAAGAACCTGTTTGGAATCAAGAACCTGCTTGGAATCAAGAACCTGATTGGAATCAAGCATTTGAGTATAATGAACTTTTAGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCGTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGATAAATGTCCTCATATTCATGGGGATTTATGTCCCACCTGTGGAAAACATTGTTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCGTGTTCTGTCAAAGCCTACAGCAGCTGAACGGAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACACTGGGAATGGATGTTAATAGCACATTGAGGGCTTGTCCTATCTGTCGCAAGCTATCATACTTTGTCATTCCTAGTGTCATTTGGTACTCAACAACCGAAGAAAAACAGGAAATCATTGACAACTACAAAGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGACGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTAGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGCAATACCGTAATTGCCAAAGACATCAGGTTGTCAGATTTCCTTTCTAACATGCATTTAAGATGA 1128 0.4291 MSRRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASRETSSTPSSSVIEHQTLVSDAVAFGDTRTTSNGVAAAAEFSLSRSPYLLPSEPAWNQEPVWNQEPAWNQEPDWNQAFEYNELLGEDNVGQSIITSPSELSICSFAAAGNCPRGDKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01639 375 ProSiteProfiles Zinc finger RING-type profile. 222 280 IPR001841 -
Cca10g01639 375 SUPERFAMILY RING/U-box 212 286 - -
Cca10g01639 375 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Cca10g01639 375 SMART ring_2 222 279 IPR001841 -
Cca10g01639 375 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Cca10g01639 375 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Cca10g01639 375 Pfam RNA-binding, Nab2-type zinc finger 314 336 - -
Cca10g01639 375 Pfam RNA-binding, Nab2-type zinc finger 158 177 - -
Cca10g01639 375 Pfam Zinc finger, C3HC4 type (RING finger) 222 279 IPR018957 GO:0046872
Cca10g01639 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 317 IPR013083 -
Cca10g01639 375 ProSiteProfiles Zinc finger C3H1-type profile. 309 338 IPR000571 GO:0046872
Cca10g01639 375 CDD RING-HC_MKRN 222 280 - -
Cca10g01639 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 115 - -
Cca10g01639 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 126 375 - -
Cca10g01639 375 Gene3D - 1 32 - -
Cca10g01639 375 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Cca10g01639 375 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Cca10g01639 375 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Cca10g01639 375 ProSitePatterns Zinc finger RING-type signature. 246 255 IPR017907 -
Cca10g01639 375 Gene3D - 33 88 - -
Cca10g01639 375 PANTHER MAKORIN-RELATED 126 375 IPR045072 -
Cca10g01639 375 PANTHER MAKORIN-RELATED 1 115 IPR045072 -
Cca10g01639 375 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Cca10g01639 375 Coils Coil 201 221 - -
Cca10g01639 375 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Cca10g01639 375 SMART c3hfinal6 309 337 IPR000571 GO:0046872
Cca10g01639 375 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Cca10g01639 375 SMART c3hfinal6 154 179 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01639 Cca-Chr10 28486710 28489413 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca10g01639 zf-C3HC4 3.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01639 K15687 - gmx:100787817 711.835