Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01638 ATGGAAACCATGTCCACAACACCTTTCACTGTGAAGGCTCTTGAGCAATGCAAAATCAAATCCCCTCCCAACACAGTTCCAAATACCTCAATCCTTCCCCTAACCTTCTTTGATCTTCCTTGGCTTTTCTTCTCTCCAACTCAACCCTTGTTTTTCTATGAACTCCCTCACTCACCCTCTCATTTCACAACCACAATAGTCCCAAAACTAAAGAAATCTCTCTCTTTCACGCTTCAACATTACTACCCTTATGCTGGTAGATTTGTACCCTCTTCTGATCTCATCACCAAACCCCATATCACTTACACTGATGACATGTCAGTTGAATTCACAATCTCTGAGTCAAATGGAGACTTCAAACAGTTTTGTAGCAATCACCCTAGAGATGCCAAAGATTTTCACTTACTTGTGCCAAAATTGGCATCAAGCATTTCATCAAGTGAAGTCAAAGAGTTTCCTTTACTAGCTATTCAAGTAACACTGTTCCCAAATGTTGGTATTTGCATTGGCCTTGCTTGTCACACTGTTGTTGCTGATGGGAGGACCTTCCACAATTTCATGAAGACATGGGCCTCACATTGCACCTTTGGATCAGCTTCAGCATTTCCAACGAACTCACTTCCATTATGTGATCGAAGTGTGATTGTTAATGAAAAGGGTCTTGAAGAGGTTTTCTTGGAAGAATGGACAAAGAGAAGACTAGAGAAGAACATTGCCATAGGTAGAGAAGCTAACTTGGTAGATCTATCAAGTATGGTTAGAGCCACTTTCTCAATGAGTATCACTCAAATGGAGAAAATGAAGCTCTTGATTATTAACTATTGCAAAGAAAAGAACAAGCCTCGGCTTGAGCCTGTTCGTTTAACATCTTATGTGTTAATTTGTGCATTTGTGTGGGTTTGTTTGGTCAAAACCCATCAAAGTGTGAATGAAAAAGCGAACCATGAAGACCCCACTTACTTTGGATTCATTGCTGGTGGCATGACTAGATTGGATTATCCAGTTCAACAGACATATTTGGGTAACTGTGTTGGCTTTTACAGGGCATCTGAAAGAAGAGAAGAGCTACTTGGAGAAAATGGGATAGTGGTTGCAGCTATAGCAATTGTAAGCGTGGTTAAGAAGCTTGATGCATTATATTTTGATGGGGCTGATAAATGGATTTTGGATTGGGAGGTGTTGCATGGCTCAGAGCAACATGTACATGCTGTTTGGTCTCCGAAATTGAAGTTTTATGAGTTGGATTTTGGGTGGGGAAGGCCCAAAAAGATAGAGGAGGTATCAATTGATCATACAAGAGCTGTTTCAGTTATACATAGTAGAGAGTTTGAGGGTGAAATTGAGATAGGCTTGGCTTTACCCAAGAGTAAGATGGATGTTTTCTCTAGTTTATTTACTCAAGGACTTAGTGCTTTGCTTTGA 1422 0.403 METMSTTPFTVKALEQCKIKSPPNTVPNTSILPLTFFDLPWLFFSPTQPLFFYELPHSPSHFTTTIVPKLKKSLSFTLQHYYPYAGRFVPSSDLITKPHITYTDDMSVEFTISESNGDFKQFCSNHPRDAKDFHLLVPKLASSISSSEVKEFPLLAIQVTLFPNVGICIGLACHTVVADGRTFHNFMKTWASHCTFGSASAFPTNSLPLCDRSVIVNEKGLEEVFLEEWTKRRLEKNIAIGREANLVDLSSMVRATFSMSITQMEKMKLLIINYCKEKNKPRLEPVRLTSYVLICAFVWVCLVKTHQSVNEKANHEDPTYFGFIAGGMTRLDYPVQQTYLGNCVGFYRASERREELLGENGIVVAAIAIVSVVKKLDALYFDGADKWILDWEVLHGSEQHVHAVWSPKLKFYELDFGWGRPKKIEEVSIDHTRAVSVIHSREFEGEIEIGLALPKSKMDVFSSLFTQGLSALL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01638 473 PANTHER - 4 471 - -
Cca10g01638 473 Gene3D - 250 472 IPR023213 -
Cca10g01638 473 PANTHER MALONYL-COENZYME A:ANTHOCYANIN 3-O-GLUCOSIDE-6''-O-MALONYLTRANSFERASE-LIKE 4 471 - -
Cca10g01638 473 Pfam Transferase family 26 463 - -
Cca10g01638 473 Gene3D - 11 240 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01638 Cca-Chr10 28457934 28459430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01638 47 461 Monolignol Biosynthesis Gene Families AT5G48930 23.168 4.21e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01638 - - gmx:100817166 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01638 10 28457934 28459430 Cca10g01638 10 28457934 28459430 ECH