Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01624 ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAACAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGGATTCTAAACCGATTAAGGTTATTTCAGGGTCTTTGTCTCCCAATCCCTCCATTACCAAAACATCAGTGGACTTGAAGGTTAATGATACGAGGAAAACATCCAAGGGTGGTTCTGGTGGCAAGCTAGCTTTCAGTTTGAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAATTGAAGCTGGGTATGTTTCAAATGATGCACCACTGAAACGACAAAAATTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTCGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCCGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAATACAAGTATTATGAATACCAGCTTGCTGAGGAAGAAAAGGCTCTTGCGCAGTCAAGGGAATCACAGGTGCCTCATAATGGGACAGGCAGTACAAGCCCTTCATCTGCCAAACAGACTAGTGGTCATCAAAGATCAACTCAGCAGCATGCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCACGAGCTTCTGGATCTTCAATTCAAACATCATCAGTAGGAAGCAGTGCAGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGCGAAGAGAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGCAAAAAAGGCCATCATATGGGTGATTTCATTCCTCCAGAAGAACTTGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCTGCACAGAAAGCTGCAAGGGATGCTGCAGAGAGGGCTAGGATTCAGGCTGATAATGTGGGCCACAGGCTCCTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGCTCCAGGAAGGGTATATCGGATCCAATCATGGCAGGCAATGTTAAAAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCTGAAGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCTCTGAACAATCCCCGCAAGGCCTATTACTGA 1320 0.4485 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVISGSLSPNPSITKTSVDLKVNDTRKTSKGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEEIEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAEEEKALAQSRESQVPHNGTGSTSPSSAKQTSGHQRSTQQHAYQIPASALYESADNPRASGSSIQTSSVGSSAEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQGKKGHHMGDFIPPEELEKFLASCNDAAAQKAARDAAERARIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01624 439 MobiDBLite consensus disorder prediction 44 60 - -
Cca10g01624 439 MobiDBLite consensus disorder prediction 294 323 - -
Cca10g01624 439 MobiDBLite consensus disorder prediction 44 146 - -
Cca10g01624 439 ProSiteProfiles SURP motif repeat profile. 148 191 IPR000061 GO:0003723|GO:0006396
Cca10g01624 439 Pfam G-patch domain 357 400 IPR000467 GO:0003676
Cca10g01624 439 MobiDBLite consensus disorder prediction 201 278 - -
Cca10g01624 439 MobiDBLite consensus disorder prediction 250 278 - -
Cca10g01624 439 Pfam Surp module 147 196 IPR000061 GO:0003723|GO:0006396
Cca10g01624 439 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 439 IPR040169 -
Cca10g01624 439 MobiDBLite consensus disorder prediction 206 241 - -
Cca10g01624 439 SMART surpneu2 146 200 IPR000061 GO:0003723|GO:0006396
Cca10g01624 439 SUPERFAMILY Surp module (SWAP domain) 131 199 IPR035967 GO:0003723|GO:0006396
Cca10g01624 439 SMART G-patch_5 354 401 IPR000467 GO:0003676
Cca10g01624 439 ProSiteProfiles G-patch domain profile. 356 403 IPR000467 GO:0003676
Cca10g01624 439 Gene3D Surp module 120 205 IPR035967 GO:0003723|GO:0006396
Cca10g01624 439 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01624 Cca-Chr10 27990780 27998848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01624 352 412 C2H2 Transcription Factor Family AT5G26610 46.774 9.58e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01624 K13096 - gmx:100786213 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01624 10 27990780 27998848 Cca10g01624 10 27990780 27998848 ECH