Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01618 ATGCACTCAGTTGGCCCTCAAGTCCATCCTAGTAGCCAAGCCCAAGATGAAGACTACAATCTGAGGGAGACCGATCCACAGCTCGGGGAGCGGTGGCCTAATGCAAGAAGAGGGTGGATGAGTGGTGGTGAAAGATTCTCAAGCACACATGACCTTGTTGAGCAGATGTTCTATCTGTATGTTAGGGTGGTGAAAGCCAAAGATCTTCCCCCAAGCATTCTCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGAAGAACAAAGCACATAGAGAAGAAAACCAATCCGGAGTGGAACCAAGTCTATGCTTTCTCTAAAGACAGAATTCAATCTTCTATTTTGGAAGTCATTGTGAAAGACAAAGATATGGTGGGAAGAGATGATTATATTGGAAGGGTGGCATTTGATCTAAATGAAGTTCCAACCAGAGTTCCCCCAGATAGTCCACTGGCTCCTCAGTGGTACAGACTCGAGGACAGGCGAGGAGAAGGGAGGGTAAGGGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAAGCTTTCTCAGAGGCTTGGCATTCTGATGCCGCAACTGTGTATGGAGAGGGTGTTTTCAATGTCAGATCAAAGGTTTATGTGTCACCAAAACTATGGTATCTAAGGGTGAATGTCATTGAAGCACAAGATGTGATACCAAGTGACAGAAACCGCCTGCCAGAGGTTTTTGTCAAGGCTCAGATGGGGAGCCAAGTGTTGAGGACCAAGATATGTCCAACTAGGACAACCACACCACTTTGGAATGAAGATTTGGTTTTTGTGGCAGCTGAACCATTTGAGGAGATGTTGACAATCACTGTGGAGGATCGAGTGCACCCTTCAAAAGATGAAGTACTAGGGAAGATAACCTTGCCATTGACCCTCTTTGAGAAGCGGTTAGACCACAGACCGGTTCATTCGCGTTGGTTCAATCTAGAGAAGTTTGGTTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTTAAATTTTCAAGCAGGATTCACCTAAGAATTTGTCTTGAAGGTGGCTACCATGTCCTTGATGAGTCCACTATGTATTCTAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCTGTTGGAATACTTGAAGTAGGCATCTTAGGAGCCCAAGGACTCCTCCCAATGAAGATGAGGGATGGCCGCGGCAGTACCGATGCATACTGTGTTGCCAAGTATGGCCAAAAATGGGTCAGAACCAGAACAATTCTTGACACTTTCAGTCCAAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACACTTGGTGTTTTTGACAACTGCCATCTAGGTGGAGGGGAAAAAGCTACTAGCGGCACTGCATCCAGGGATTCAAGAATTGGAAAGGTAAGGATTAGGCTCTCAACACTTGAAGCTCATAGGATATACACTCATAGCTACCCCCTTCTTGTTTTGCATCCACATGGTGTCAAGAAAATGGGTGACCTTCAGCTAGCAGTGAGGTTCACGAGCCTCTCACTGGCTAACATGGTTTACATTTATGGCCAACCCTTGCTTCCAAAGATGCATTACTTGCGCCCTTTCACCATTAACCAAGTAGAGAGTTTGAGGTACCAAGCCATGAACATTGTGGCAGTGAGGCTTGGAAGAGCTGAACCTCCCCTCAGGAAGGAAGTGGTGGAGTACATGTTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTTCGCATCATGTCACTTTTCTCTGGCATCATCACAATGGGGCAATGGTTTAGCCAAGTTTGCCATTGGAAGAACCCCATCACATCAATCCTAGTTCACATTCTCTTCCTCATACTCATTTTCTACCCTGAATTGATCCTTCCAACTTTGTTCCTCTACATGTTCTTGATTGGCCTGTGGAACTATAGGTTCAGACCTAGACACCCACCCCACATGGACACAAAACTCTCATGGGCAGAAGCAGTTCACCCTGATGAGCTTGATGAAGAGTTTGACACATTCCCAACTTCAAGATCACATGATGTGGTGAGAATGAGGTATGACAGGCTTAGAAGTGTTGCAGGAAGGATTCAAACAGTTGTAGGGGACATAGCAACACAGGGAGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACACCAGAGCAACCAGCCTCTTTGTTGTGTTCAGCTTTTGTTCAGCTGTGGTTCTCTATGCAGCACCACCGAGAGTGGTGGCTATGGTAATAGGTTTGTATTATCTGCGGCATCCTAAGTTTCGTAGCAAACTTCCTTCTGTACCTAGCAACTTCTTCAAGAGGTTACCAGCAAGAACAGATAGCATGCTGTGA 2397 0.4581 MHSVGPQVHPSSQAQDEDYNLRETDPQLGERWPNARRGWMSGGERFSSTHDLVEQMFYLYVRVVKAKDLPPSILTSSCDPYVEVKLGNYKGRTKHIEKKTNPEWNQVYAFSKDRIQSSILEVIVKDKDMVGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGRVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYVSPKLWYLRVNVIEAQDVIPSDRNRLPEVFVKAQMGSQVLRTKICPTRTTTPLWNEDLVFVAAEPFEEMLTITVEDRVHPSKDEVLGKITLPLTLFEKRLDHRPVHSRWFNLEKFGFGMMEADRRNELKFSSRIHLRICLEGGYHVLDESTMYSSDQRPTARQLWKQPVGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTILDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKATSGTASRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGDLQLAVRFTSLSLANMVYIYGQPLLPKMHYLRPFTINQVESLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSILVHILFLILIFYPELILPTLFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRSHDVVRMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDTRATSLFVVFSFCSAVVLYAAPPRVVAMVIGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01618 798 ProSiteProfiles C2 domain profile. 367 496 IPR000008 -
Cca10g01618 798 MobiDBLite consensus disorder prediction 1 15 - -
Cca10g01618 798 Gene3D C2 domain 54 200 IPR035892 -
Cca10g01618 798 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 12 798 - -
Cca10g01618 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 220 375 IPR035892 -
Cca10g01618 798 CDD C2C_MCTP_PRT_plant 221 373 - -
Cca10g01618 798 Gene3D C2 domain 381 522 IPR035892 -
Cca10g01618 798 ProSiteProfiles C2 domain profile. 201 324 IPR000008 -
Cca10g01618 798 Pfam Plant phosphoribosyltransferase C-terminal 643 798 IPR013583 -
Cca10g01618 798 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 12 798 - -
Cca10g01618 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 384 520 IPR035892 -
Cca10g01618 798 ProSiteProfiles C2 domain profile. 40 161 IPR000008 -
Cca10g01618 798 CDD C2B_MCTP_PRT_plant 58 184 - -
Cca10g01618 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 58 198 IPR035892 -
Cca10g01618 798 SMART C2_3c 385 495 IPR000008 -
Cca10g01618 798 SMART C2_3c 221 321 IPR000008 -
Cca10g01618 798 SMART C2_3c 58 155 IPR000008 -
Cca10g01618 798 CDD C2D_MCTP_PRT_plant 385 515 - -
Cca10g01618 798 MobiDBLite consensus disorder prediction 1 34 - -
Cca10g01618 798 Pfam C2 domain 58 161 IPR000008 -
Cca10g01618 798 Pfam C2 domain 220 326 IPR000008 -
Cca10g01618 798 Pfam C2 domain 384 498 IPR000008 -
Cca10g01618 798 Gene3D C2 domain 208 354 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01618 Cca-Chr10 27860411 27862807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01618 17 798 Lipid Metabolism Gene Families AT5G48060 77.354 0.0 1293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01618 - - gmx:102661772 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01618 10 27860411 27862807 Cca04g01936 04 37711639 37715635 ECH
Cca02g00769 02 20049528 20052239 Cca10g01618 10 27860411 27862807 ECH
Cca03g02011 03 40228949 40232765 Cca10g01618 10 27860411 27862807 ECH
Cca10g01618 10 27860411 27862807 Cca10g01618 10 27860411 27862807 ECH