Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01616 ATGGCGCCGAAGAAACCAAGAAGCGCGAGGGTGACAAGGAACCCTCAGTTGATAAGGGGAATTGGGAAGTACTCGCGTTCCCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAGCACGGCGGCGTTTTTCCTCGCCACGATcccaagcccaagccccaagccccggcccagaagccGCCCAAGTTTTACCCAGCTGATGATGTCAGGAGGCCCCTCGTCAACAAGCACAAGCCCAAGCCTGCAAAGCTAAGGGCTAGCATTACTCCCGGGACAGTTTTGCTGCTTCCATCTGGGTTGCTTCTTGTAACAGGTCCCTTTAAGATCAATGGGGTTCCTCTGAGAAGGGTGAACCAGTCATATGTCATTGGTACATCCACAAAAGTGGACATCTCTGGTGTTAACGTCGATAAATTTGATGACAAGTACTTTGCCAAGGAAGCCAAGAAAAAGAAAACCAAGGGAGAAGGCGAGTTCTTCGAGGCAGAGAAGGAGGAGAAAAACGTGCTTCCTCAAGAAAAGAAAGACGACCAAAAAACTGTGGACACTGCTTTGTTAAAGGCCATTGAGAGTGTTCCGGACTTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCTCATGAGCTAGTCTTCTAG 657 0.4642 MAPKKPRSARVTRNPQLIRGIGKYSRSQMYHKRGIWAIKAKHGGVFPRHDPKPKPQAPAQKPPKFYPADDVRRPLVNKHKPKPAKLRASITPGTVLLLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01616 218 Gene3D - 94 156 IPR014722 -
Cca10g01616 218 SUPERFAMILY Translation proteins SH3-like domain 88 158 IPR008991 -
Cca10g01616 218 MobiDBLite consensus disorder prediction 41 83 - -
Cca10g01616 218 Pfam Ribosomal protein L6e 111 218 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca10g01616 218 PANTHER 60S RIBOSOMAL PROTEIN L6 1 218 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca10g01616 218 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Cca10g01616 218 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g01616 218 CDD KOW_RPL6 82 218 IPR041997 -
Cca10g01616 218 PANTHER 60S RIBOSOMAL PROTEIN L6 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01616 Cca-Chr10 27814266 27816749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01616 3 218 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 74.138 2.10e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01616 K02934 - gmx:100784101 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01616 10 27814266 27816749 Cca10g01616 10 27814266 27816749 ECH