Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01609 ATGGCTTCTCTTTACTCTTCTCTCCTCTCGCCACCCAATTTCCTTTCCCTCACAACCTCTCCGAGCTCCTCCGCTCACATTATGCGACCCCTTCTCACCCCACGACGCCGTTTCGGGAGACTCTTTGCGGTGGCCGAACAAGCTACGGTGACCGAGGCCGCCAGGAAGCTCTACGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCCAAGATTGTTCAGGAGCATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGTTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGTTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAAATCAAAGTAAATATAACTGAAAAACCTTTATCAACACTAGATTTGCCTTTACTCCAAGCTGAGGAATCCGAATTTATTGACAGTCCCCACAAGGTGTATGTGGGCAATCTGGCCAGGACAGTAACAACTGATACTCTTAAAACGTTTTTCTCTGAGAAGGGAAGAGTTCTAAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTTCTTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTTGTTAGAAGGGCAAAAAATTCGTGTGAACAAGGCTTAG 696 0.4583 MASLYSSLLSPPNFLSLTTSPSSSAHIMRPLLTPRRRFGRLFAVAEQATVTEAARKLYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANVVIEKLNGTEIGGREIKVNITEKPLSTLDLPLLQAEESEFIDSPHKVYVGNLARTVTTDTLKTFFSEKGRVLSAKVSRVPGTSKSSGYGFVSFSSEEDVEAAISSFNNSLLEGQKIRVNKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01609 231 Gene3D - 143 231 IPR012677 -
Cca10g01609 231 SUPERFAMILY RNA-binding domain, RBD 149 231 IPR035979 GO:0003676
Cca10g01609 231 PANTHER OS02G0815200 PROTEIN 36 231 - -
Cca10g01609 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Cca10g01609 231 CDD RRM_HP0827_like 56 133 - -
Cca10g01609 231 Gene3D - 33 137 IPR012677 -
Cca10g01609 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 231 IPR000504 GO:0003723
Cca10g01609 231 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 36 231 - -
Cca10g01609 231 SUPERFAMILY RNA-binding domain, RBD 51 133 IPR035979 GO:0003676
Cca10g01609 231 SMART rrm1_1 56 129 IPR000504 GO:0003723
Cca10g01609 231 SMART rrm1_1 156 229 IPR000504 GO:0003723
Cca10g01609 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 127 IPR000504 GO:0003723
Cca10g01609 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 227 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01609 Cca-Chr10 27608552 27613834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01609 57 231 Eukaryotic Initiation Factors Gene Family AT2G23350 33.708 7.23e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01609 K13126 - gmx:100783567 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01609 10 27608552 27613834 Cca10g01609 10 27608552 27613834 ECH