LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g01596	ATGTGGAGATTTAAGCCATTCATGCACAAAGAGCAGACTGGCCTTGAAGGTCGTAGCGTAGATGTTGGCAATCTTAAAATACATGTTGTTAAGGCCATTGCTGAAGGAGGGTTCTCTTCTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATACTATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGTGAGAGGTCTCTGGTTAGTGTGTTGGAGAGTCGAGGAGCTGGTTATTTTGATGAAAAACAGGTTCTTTTGATCTTCAGGGATGTGTGTAATGCAGTTTTTGCCATGCACTGCCAGTCCCCTCCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAAGTTCAGATGGCGTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAACCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAGTGAGAAGGTGGACATATGGGCTCTTGGATGTCTTCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTGAACGGAAACTACCGCATTCCAGATTTACCAAAATACAGTTCATCTATCATGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTGTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATCGCCCTCATCCAACAGTCATGAAGGTGTGCCATTGTCCTCAAACAGATCACCTCCAATGCCTCGGAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACTACACCACAGCCATCCCATGCTTCTAGGGGAGGGGGAAGTGGGGGGCAGCTTGGTGTTTTCTGGTCCACACAGCATGCAAAGGACTCACTTGTCCCTGAGGATAAGAGCAAACCAATTTTTGATGAAGAACCTTCTAGCCATCATGTGTCATTGAAAAATGATAGAGTTCGCCCCGAAAGCGATCAATTGCCCAAAAATGTTGGTACTAACAAAGTGGTTACACAAACTCATCCTGTGAAAAGCAGTACACAAGGAAAATTACACAAGCCTGATACTGTACCCTCCAAGGATTTTGAATTAAATTTCTTTCAGGATAAAGATTGTGTGGGTGAGAGACAAAAGTCTAGTATGGAGAATAATGCTAACTTTCAAAACCAGGCTTTTAATACTTTTGTTGCTGAATTTGATACCGCCAAGCTCAACTCTGGACTTGGTGACAAACCCGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGAAACTGAAAGAGCAGCTGAAGGAAGCTAACTTGGAAAAAGCTGAAATTACTTCAAAGTATGAAAAGCTTACTGCTATCTGCCGATCACAAAGGCAAGAATTACAGGATCTCAAGCAAGCACTTGCAGCTAGGACTCCTTCACCAAGTAGAGAGGGTTTGAAAACCCCTCCTGCTGTTACATCATCTGCATCTGCGAGAGAGAAGATTGCTGGGGATAGAACTGAATGGAAAACTCCCAGTTCAGAACCAAAGTCATGGCAAGCTTTTCCAGTGGAACCCCAACAACAAAAATCCCTTTCAGCAGAAAATACCGCCAAATCGGTCAGGTCAAAAAATGGTCAGCAGAACAAGCAACCTGTTCCTCCTGCTACAAATTTTGATTCATGGGGTTTTGGGACAGATAGCTTCAGTGCTATAGCTGCTGGCAGCCAGCAGATTCAAAGACCTGCTGAAGGGAGCAAGTCTCAGGCTTTTGGTGAGGCCAAGGCCTTTGAGAGCAAGCCAACTTCTCAACCAGCTGGTTGGGCTGGTTTTTAA	2055	0.4404	MWRFKPFMHKEQTGLEGRSVDVGNLKIHVVKAIAEGGFSSVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVMKMLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCERSLVSVLESRGAGYFDEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGVWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVISEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYSSSIMDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSSNSHEGVPLSSNRSPPMPRRNPPPPPSSGEPKTTPQPSHASRGGGSGGQLGVFWSTQHAKDSLVPEDKSKPIFDEEPSSHHVSLKNDRVRPESDQLPKNVGTNKVVTQTHPVKSSTQGKLHKPDTVPSKDFELNFFQDKDCVGERQKSSMENNANFQNQAFNTFVAEFDTAKLNSGLGDKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLTAICRSQRQELQDLKQALAARTPSPSREGLKTPPAVTSSASAREKIAGDRTEWKTPSSEPKSWQAFPVEPQQQKSLSAENTAKSVRSKNGQQNKQPVPPATNFDSWGFGTDSFSAIAAGSQQIQRPAEGSKSQAFGEAKAFESKPTSQPAGWAGF	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	586	658	-	-
	Cca10g01596	684	CDD	STKc_GAK_like	26	298	-	-
	Cca10g01596	684	Coils	Coil	498	546	-	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	329	346	-	-
	Cca10g01596	684	Pfam	Protein kinase domain	28	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	381	440	-	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	301	366	-	-
	Cca10g01596	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Cca10g01596	684	SUPERFAMILY	Protein kinase-like (PK-like)	28	343	IPR011009	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	543	684	-	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	381	408	-	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	301	324	-	-
	Cca10g01596	684	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca10g01596	684	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	672	-	-
	Cca10g01596	684	MobiDBLite	consensus disorder prediction	410	436	-	-
	Cca10g01596	684	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	672	-	-
	Cca10g01596	684	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca10g01596	684	Gene3D	Transferase(Phosphotransferase) domain 1	10	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g01596	Cca-Chr10	27042618	27047552	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g01596	26	292	Miscellaneous Gene Families	AT2G34180	29.537	4.02e-21	95.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Cca10g01596		Pkinase	3.4e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g01596	K08853		-	gmx:100808507	1116.68