Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01589 ATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTCTCTAACCGAAGAAGAGCAGTGTCTTGTGATATGGCTTCAAGCGAAACATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAGGTGTTCAAAGAGAAACAACAAAGGGAGAAACAAGAGATTCACAAAGCAATTGGCCCAGTTGATGACACCAAATATGATCATATACTAGAGACTTTTGCTGAGAAACTAGTGAAAGAACAACACCCTTCACAATCACCCTGCTGA 348 0.4454 MNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQCLVIWLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEIHKAIGPVDDTKYDHILETFAEKLVKEQHPSQSPC 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01589 115 SUPERFAMILY Homeodomain-like 6 74 IPR009057 -
Cca10g01589 115 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Cca10g01589 115 SMART sant 25 73 IPR001005 -
Cca10g01589 115 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 110 - -
Cca10g01589 115 CDD SANT 30 71 IPR001005 -
Cca10g01589 115 Pfam Myb-like DNA-binding domain 27 61 IPR001005 -
Cca10g01589 115 Gene3D - 29 92 - -
Cca10g01589 115 PANTHER TRANSCRIPTION FACTOR AS1 1 110 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca10g01589 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01589 Cca-Chr10 26758835 26759182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01589 1 108 MYB Transcription Factor Family AT2G37630 84.259 4.52e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g01589 Myb_DNA-binding 8.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01589 K09422 - twl:119985563 200.29