Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01585 ATGAACACGCCTCTTAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGCTGTCTAACCGAAGAAGAGCAGCGTCTTGTGATCCGGCTTCAAGCGAAACATGGCAACAAGTGGAAGAAAATCGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGCAAGTGGTGGGAGGTGTTCAAAGAGAAACAACAAAGGGAGAAACAAAAGATTCACAAAGCAATTGGCCCAGTTGATGACACCAAATATGATCATATACTAGAGACTTTTGCTAAGAAACTAGTGAAAGAACAACACCCTTCACAATCACCATACCTTATGGTTGCTGCATCTAATGGACCAGGGAATGCAGCAACACCTCATGGTATGAGGAAGGAGGCGGCTTGGCGGTTGAGAAAGGTGGAGCTGCAGTTGGAGGTAGAGAAGACGAGCCAAAGGAAGGAAAAGATGGATGAAATTGAGGCAAAGATTAAGGCTCTTTGGGTGAAACAGAATGCTGCTTTGGATAGAATTGAATCAGAATGCAGAGAACAGTTAGCAGGGATGAGGAGAGATGCGGAAAGCAAGGAGCAGAAGTTGGCTGAGCAATGGAATGCAAAGCACATGAGGGTAGTGAAATGTATGGAGCAAGTAGGATGCAGAATGCCACAGATTGCTGAGCCTAATGGAAGATAA 705 0.4567 MNTPLNRDAKSCLERWKNYLKPGIKKGCLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQKIHKAIGPVDDTKYDHILETFAKKLVKEQHPSQSPYLMVAASNGPGNAATPHGMRKEAAWRLRKVELQLEVEKTSQRKEKMDEIEAKIKALWVKQNAALDRIESECREQLAGMRRDAESKEQKLAEQWNAKHMRVVKCMEQVGCRMPQIAEPNGR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01585 234 SUPERFAMILY Homeodomain-like 6 74 IPR009057 -
Cca10g01585 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Cca10g01585 234 PANTHER TRANSCRIPTION FACTOR AS1 1 119 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca10g01585 234 PANTHER TRANSCRIPTION FACTOR AS1 133 234 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca10g01585 234 Gene3D - 29 86 - -
Cca10g01585 234 CDD SANT 30 71 IPR001005 -
Cca10g01585 234 Coils Coil 143 163 - -
Cca10g01585 234 SMART sant 25 73 IPR001005 -
Cca10g01585 234 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 119 - -
Cca10g01585 234 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 133 234 - -
Cca10g01585 234 Pfam Myb-like DNA-binding domain 28 61 IPR001005 -
Cca10g01585 234 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01585 Cca-Chr10 26680202 26681006 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01585 134 225 MYB Transcription Factor Family AT2G37630 61.290 3.46e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g01585 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01585 K09422 - mus:103999275 283.108