Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01569 ATGGAAAATCACCAAAACCACAAGGGAGAGGCAGAACCTGACATAGAGAAGAATCACCAGCAACACCGTAACCAAGCGTGGGGCACGTGGGAGGAGCTCTTGCTAGCGTGCGCCGTGAACCGCCATGGCTTCAAGGACTGGGACGCCGTCGCCATGGAGGTTCAGTCACGCACCACGCGCCTCCTCGCCACCGCGCGCCACTGCGAGCAGAGATTTCACGATCTCAACCGCCGATTCACCGACGACGTTCCGCCGCCGCGCCAGAACGGCACCGCCGCCGGCGACAACGCCGATCACGTCCCCTGGCTCGACGAATTGCGGAAGCTCCGCGTCGCGGAGCTCCGCCGCGAGGTCCAACGCAGCGACGTTTCCATTCTGTCGTTGCAGTTGGAGGTTAAGAGGCTAGAGGAGGAGAAGGCGACAGAGAATGACGGAAAAGCCGACGAGAAACCAGATCTGGCGGTTTCCGGCGAGGCGCGGCCGGAAAAAGACAAAACCGGCGGAGAAGTTGAGGAGGCTGGACCGGCGAATTCCGAACCGGAGAGAACCGCGGACGTGGAAAAGATGTTGCCAACAACTGGCGACGAATCGGACCGGGAGAATCAGTCGGTTAACGAGTCTAACTCGACCGGTTCGCGGTTCGAGAAAACCGGAGAGGGCGACGCCAAGTTAGGAGCCGGACCGGAGCGCTACGATGCTTTGGCGAAGGTGCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGCACAAGGTGGAGGAGGACGATGACTCGTCCGAGTTACACGACTCGGTGGCTCACTCCGGCGAGGGAGCGACGCGCGAGAGCAGCGAGGTTCAGAGCTCTGCGAGCTTGACGAGGAAGAGGAAGACGCGGCGGAGGAAGGAGCTTTCCGGCGGCGAGGCGCCGCCGCCGGAGAACGACGAGGTGGCGATGGTTAAATCAGAGCCGTTGGTTGGGGTTTTTGAGTTGATCAAGGGGCACGAACAAAGCTCATTGTTCGAGCGCCGTCTCGAAAGCCAGGATTCGGAAAGATACAAAGACATAGTGAAACAGCCCCTTGACCTGGAAACCATACAATTAAGACTCCAAAAGGGTCACTATTCCTCATGTACTAGTGCATTCTTCCGAGACCTCCTCCTCCTCTTCACCAACGCCAGCGTGTTCTTTCCCCATGACTCCGCCGAATCACAGGCGGGGCGGCAGCTGCACCGCCTCGTCACCGCCGAGATGAAGAATCGTGGCCAAGCACAATCCGACCCTGTTTCCCGGAAGAATGATCCACTCCCTCCAAACGCACCACTAGCCAAACCAGATTCTCTTTTTTCCAAGAACAAAGCCTCCTCTGGTCCTATATTGGTTTGCCGCAAACGCAGTTCAATGTCAGCCAAACCTTCCTCAGCCACCTTTGGCCAAAAGGGTGGTGACCAACCCGTCTTCAATGACAAGAAGGAAAGACCATCTTCTGATGCAAAACCACCCATGAAGCCCTCTTCTGATACAGACGAGGAGGAGCTTCCCAAGGCTAAGGAAAAGCCTGTCACTGGAGCTAGAAGCCTGAGAAGGAGCAACAAGAACCTCaataataataataataataataataataacaacaacaataataatagtaataataaGAAACTTCCCTCTAACTCCACTCCTAAGGCTGGGTCCTCGGGGAACAAGCCGCCGGAGACCCTTAAACAAGAGAAGAGCAAAGCAGAGGGAGGGCCAGACAAGAAGAGGAGTGCTGCTGCAGATTTCTTGAAACGGATTAAGCGAAACACATCAGTGGAAGCATCGAAGggtggtagtggcagcggtggcggagggggaagtagtggcagcagcaagggtggtggaggtggtattggtgCAAAAGAGCAGAAGAAAATGGCGAATAATGGAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAACGCTGGAGGAGGTTCAGGGTCTGCTGGGGATAAAAGGAATAATAAGAATGTTGTTGAGACCAACTCTCAGTCGAAGAGGAGTGTTGGTAGACCTCCAAAGAAGGCACCAGCAGAGACAAATGCAGGTAGTGCAAAGCGTGGGAGGGAAAGTAGTGCTGGTGCTAGTGCTGGCAAGGATAAACGACCCAAGAAACGTTCCAAGAAATGA 2151 0.5258 MENHQNHKGEAEPDIEKNHQQHRNQAWGTWEELLLACAVNRHGFKDWDAVAMEVQSRTTRLLATARHCEQRFHDLNRRFTDDVPPPRQNGTAAGDNADHVPWLDELRKLRVAELRREVQRSDVSILSLQLEVKRLEEEKATENDGKADEKPDLAVSGEARPEKDKTGGEVEEAGPANSEPERTADVEKMLPTTGDESDRENQSVNESNSTGSRFEKTGEGDAKLGAGPERYDALAKVPTCESVPPSEEHKVEEDDDSSELHDSVAHSGEGATRESSEVQSSASLTRKRKTRRRKELSGGEAPPPENDEVAMVKSEPLVGVFELIKGHEQSSLFERRLESQDSERYKDIVKQPLDLETIQLRLQKGHYSSCTSAFFRDLLLLFTNASVFFPHDSAESQAGRQLHRLVTAEMKNRGQAQSDPVSRKNDPLPPNAPLAKPDSLFSKNKASSGPILVCRKRSSMSAKPSSATFGQKGGDQPVFNDKKERPSSDAKPPMKPSSDTDEEELPKAKEKPVTGARSLRRSNKNLNNNNNNNNNNNNNNNSNNKKLPSNSTPKAGSSGNKPPETLKQEKSKAEGGPDKKRSAAADFLKRIKRNTSVEASKGGSGSGGGGGSSGSSKGGGGGIGAKEQKKMANNGKGDKGKERASRHNAGGGSGSAGDKRNNKNVVETNSQSKRSVGRPPKKAPAETNAGSAKRGRESSAGASAGKDKRPKKRSKK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01569 716 ProSiteProfiles Bromodomain profile. 325 396 IPR001487 GO:0005515
Cca10g01569 716 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Cca10g01569 716 Coils Coil 118 145 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 518 564 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g01569 716 CDD SANT 26 58 IPR001005 -
Cca10g01569 716 MobiDBLite consensus disorder prediction 565 596 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 597 613 - -
Cca10g01569 716 Pfam Bromodomain 321 397 IPR001487 GO:0005515
Cca10g01569 716 Gene3D - 306 420 IPR036427 GO:0005515
Cca10g01569 716 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 137 202 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 269 283 - -
Cca10g01569 716 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 12 716 - -
Cca10g01569 716 SUPERFAMILY Bromodomain 316 413 IPR036427 GO:0005515
Cca10g01569 716 MobiDBLite consensus disorder prediction 459 473 - -
Cca10g01569 716 PANTHER BNAC04G22430D PROTEIN 12 716 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 655 676 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 477 517 - -
Cca10g01569 716 Gene3D - 18 75 - -
Cca10g01569 716 Coils Coil 516 543 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 78 98 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 411 716 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 631 646 - -
Cca10g01569 716 SMART sant 23 78 IPR001005 -
Cca10g01569 716 SUPERFAMILY Homeodomain-like 21 76 IPR009057 -
Cca10g01569 716 MobiDBLite consensus disorder prediction 137 308 - -
Cca10g01569 716 MobiDBLite consensus disorder prediction 243 268 - -
Cca10g01569 716 SMART bromo_6 121 415 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01569 Cca-Chr10 26371658 26376909 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g01569 Bromodomain 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01569 - - gmx:100811021 1050.04