Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01564 ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGGTTCATGGAAAAGCCTCGTGAAGCTTCCAACCAACTGGGGTTAGGCTTCAACACCACTTTATCAATTGGTCCAATCATCACTAGACaaaaagatcatgaagaccaagaactagaagaggaagaagaagaagaaacaaagccaaagaaacacaagaacaaCATCAACAATCTCACAACAGAAGACCCTAATGACCTTTCTTCCAAACCCAACAACAACAACCCAGTTCTTCATCAACTTGATCTTCTCCCTCAACTCTCTTTCCCATGGCACCCTCCGTCTGAAAACGGGAGTTTATCATCCGATTTGGGGGGCTCTTCGAGGGGGTTGGACGTGAACGCGCAGCcggcggcggcggaggaggaggcggaggaagcggcggcgCTGTCGTCATCTCCGAACAGCGCGGCCTCATCGTTTCAAATGGATCTCTGCATATACAGCAACAGAGGAGGAAGCTTCTACAAGAGAGACTCCGAGGGCGAGGCTTATGATCAAAGAGCCTCTTCGAGAGCCAGTGATGAAGACGACACCAACGGTGGACCCGCCAACACCAGAAAAAAACTCAGACTCTCTAAGGAACAATCTGCGTTCCTCGAAGAAAGCTTCAAAGAACACAACACTCTTAATCCCAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGTCAAGTTGAAGTCTGGTTCCAAAATCGTCGAGCAAGGACAAAGTTGAAGCAAACGGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCGTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGTCCTTCTTGTGAACGCGTGGCCACAAATTCCACCACCACTTCCTCATCCCTCGGTGCCACCATCAATGCAAATTCAGGAACCATGGCTAGTGTCAAAACGAGtaataataataatactattactaatGACTCCAACTCCAATTCCAATTCCAAGGCCATTGGATTCCCCTTTGGAAAACCAAGGTTTCATCCATTTGTTCATGCTAGCCAACAATCCCATCAACATCAATCCCCAGCGTCTTGA 1167 0.419 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFNTTLSIGPIITRQKDHEDQELEEEEEEETKPKKHKNNINNLTTEDPNDLSSKPNNNNPVLHQLDLLPQLSFPWHPPSENGSLSSDLGGSSRGLDVNAQPAAAEEEAEEAAALSSSPNSAASSFQMDLCIYSNRGGSFYKRDSEGEAYDQRASSRASDEDDTNGGPANTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTTTSSSLGATINANSGTMASVKTSNNNNTITNDSNSNSNSKAIGFPFGKPRFHPFVHASQQSHQHQSPAS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01564 388 Pfam Homeodomain 201 255 IPR001356 GO:0003677
Cca10g01564 388 ProSiteProfiles 'Homeobox' domain profile. 197 257 IPR001356 GO:0003677
Cca10g01564 388 MobiDBLite consensus disorder prediction 106 123 - -
Cca10g01564 388 Pfam Homeobox associated leucine zipper 257 291 IPR003106 GO:0006355|GO:0043565
Cca10g01564 388 PANTHER - 1 379 - -
Cca10g01564 388 SMART HOX_1 199 261 IPR001356 GO:0003677
Cca10g01564 388 CDD homeodomain 201 258 IPR001356 GO:0003677
Cca10g01564 388 Pfam HD-ZIP protein N terminus 108 155 IPR006712 GO:0005634
Cca10g01564 388 SMART halz 257 300 IPR003106 GO:0006355|GO:0043565
Cca10g01564 388 MobiDBLite consensus disorder prediction 335 388 - -
Cca10g01564 388 MobiDBLite consensus disorder prediction 27 41 - -
Cca10g01564 388 MobiDBLite consensus disorder prediction 171 205 - -
Cca10g01564 388 MobiDBLite consensus disorder prediction 335 361 - -
Cca10g01564 388 Coils Coil 270 293 - -
Cca10g01564 388 ProSitePatterns 'Homeobox' domain signature. 232 255 IPR017970 GO:0000981|GO:0006355
Cca10g01564 388 Gene3D - 205 255 - -
Cca10g01564 388 SUPERFAMILY Homeodomain-like 188 258 IPR009057 -
Cca10g01564 388 MobiDBLite consensus disorder prediction 1 150 - -
Cca10g01564 388 MobiDBLite consensus disorder prediction 72 95 - -
Cca10g01564 388 PANTHER PROTEIN, PUTATIVE-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01564 Cca-Chr10 26136168 26138536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01564 116 313 Homeobox Transcription Factor Family AT3G60390 58.537 1.91e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca10g01564 Homeodomain 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01564 K09338 - gmx:100778742 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01564 10 26136168 26138536 Cca10g01564 10 26136168 26138536 ECH