Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01563 ATGGAGCTTGATTTAGAAGAGCGTATTAGATGCCTAGAAGCAGTAGTGTTCAGAGCTAGGCAGCGTCAGAGGCGGCCACTGAGTCATGCTCCAATTCAGATCATTAACTATGCAGGAGAATTGGTAACAATTGGTAATGTTCAAGATGAAGGCAGGGTGCACCAGGAACAGCTTGGTATTGATATTGAAGAAGAGACGGTGAGAGGTGGGAGAATGGGTGAAAGGAAAGGTACCTATCTGATTGCTAAAGCATTGGGGGTGGAAACATATACCGATGAGGATGAGGGTTGTGCTGGAATGTTTCATTGTAATATATGTTTGGACATAGCAAGAGATCCAGTTTTGACTTGCTGTGGTCACTTGTTCTGTTGGCCATGCTTTCATAAGTTGTCATATGCGTATTTAAATGTGAAGGAATGTCCAGTTTGTAAAGGAGAGGTCACTGAAGAAGGCATTATCCCAATTTATGGCAATGCAAATGTTGATAATAGTAGTGGCCAGTTAGACTCAAATGAAACTGATTCGAGAGTTCCTGCTCGACCCCGTGCACGTAGAATTAAGCATATGCAGCCTTTCAGAAACTGA 585 0.4291 MELDLEERIRCLEAVVFRARQRQRRPLSHAPIQIINYAGELVTIGNVQDEGRVHQEQLGIDIEEETVRGGRMGERKGTYLIAKALGVETYTDEDEGCAGMFHCNICLDIARDPVLTCCGHLFCWPCFHKLSYAYLNVKECPVCKGEVTEEGIIPIYGNANVDNSSGQLDSNETDSRVPARPRARRIKHMQPFRN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01563 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 190 IPR013083 -
Cca10g01563 194 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Cca10g01563 194 SMART ring_2 103 143 IPR001841 -
Cca10g01563 194 SUPERFAMILY RING/U-box 96 155 - -
Cca10g01563 194 Pfam Zinc finger, C3HC4 type (RING finger) 102 148 - -
Cca10g01563 194 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 4 189 - -
Cca10g01563 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 189 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01563 Cca-Chr10 25971145 25973230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01563 77 190 C3H Transcription Factor Family AT3G58030 44.444 1.23e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01563 K10666 - gmx:100780540 253.832