Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01555 ATGGCGGAAGCAAAAACGTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTAACGCTCCCTCCGTCCCCTCTCCTCTGCCCCCACTGCCACACCCACTTCCTGGAACTCATGGACTCCCCCCTCTCCCTAAACGACGCGGAATCCCCCCTCTTCGACGTCGTTTTCCAGGACGCCCTCTTACTCCTCTCCCCCAAGCCCCTCCCGTCAAAGCCCCCTCCCATTCCCTCCATCTCCGTCACGGCCTCCCTCCTCTCGGAGCTGGACCCAAACGGCGTCGTCCTCTGCGCCGTTTGCAAGGAGCCAATGGGGCTCGAGGCGGAGGCGAAGCAGCTCCCCTGCAAGCACCTGTACCACGCCGACTGCATCACGCCCTGGCTCCGCCTCCACGCCTCCTGCCCCCTCTGCAGGTTCCGCCTCCACGAAGACCACCAACCGCTTCAGGATCACGATCACGATGAGGATAACGCCGTCGTCACGGAGATCCGGAGGGACCTCATTGCGCGCCTCACCGACCTCACGGAGGACGACTTCTTCGGCCTCAGGACCACTCTCAGCCACATTGCCTCGCGCCACGCGCTCATCCAAGGCGACGACCCTCGCGCCGCCCTATAA 615 0.6407 MAEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPLSLNDAESPLFDVVFQDALLLLSPKPLPSKPPPIPSISVTASLLSELDPNGVVLCAVCKEPMGLEAEAKQLPCKHLYHADCITPWLRLHASCPLCRFRLHEDHQPLQDHDHDEDNAVVTEIRRDLIARLTDLTEDDFFGLRTTLSHIASRHALIQGDDPRAAL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01555 204 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Cca10g01555 204 SMART ring_2 96 136 IPR001841 -
Cca10g01555 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 153 IPR013083 -
Cca10g01555 204 SUPERFAMILY RING/U-box 95 144 - -
Cca10g01555 204 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 42 - -
Cca10g01555 204 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 64 149 - -
Cca10g01555 204 Pfam zinc-ribbon 6 38 IPR039525 GO:0061630
Cca10g01555 204 Pfam Ring finger domain 96 137 IPR001841 -
Cca10g01555 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 149 - -
Cca10g01555 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01555 Cca-Chr10 25742961 25745128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01555 3 181 C3H Transcription Factor Family AT3G60080 33.745 5.81e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01555 K11982 - gmx:100775530 271.937