Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01554 ATGGAAATATTATCACAAATGTGGTCTCTGTTAGGGTTACTCACCGTGCTGCAAAACGTTCTCCCGTCGCAGCTCCTCGCATTGCTCCACTCCTTATACGAATCTCTCCAAGACCTTCTCTCTCCGTACTCCTACTTCGAGATTCCCGAGTTCAACGGCTACTGCGGCGTCGACCTCAACGACCTCTACCGCCACGCGCACCTCTACCTCAAcgccgccaaccacgcccccgccgccgcctgccgccgccTCACGCTCTCCCGCTCGCCCTCCTCCAACCGCATCTCCTTCGCCGTTGCGCCCAACCACACCGTCCACGACGCCTTCCGCGGCCACCGCGTCACGTGGACGCACCACGTCGACACCGCGCAGGACTCGCTCGAGGAGAAGCGCAGCTTCTCCCTCCGCCTCCCCAAGCGCCACCGCCACGCGCTCCTCTCCCCCTACCTCGCGCACGTCACCGCACGCGCCGAGGAGTTCGAGCGCGTCTCGCGCGAGCGACGACTCTTCACCAACAACACCACCGGGTCCGGGTCCTTCGAATCGGGTTGGGTCTCCGTCCCCTTCCGTCACCCTTCAACGTTCGAAACCCTCGCCCTCGAGCCCGAACTCAAAAAAACCATCAAAAACGACTTAACGGCGTTTGCCCAGGGTAAAGACTTTTATAACCGAGTGGGCCGGGCCTGGAAGCGTGGGTATTTACTCCACGGCCCACCGGGCTCGGGTAAGTCCAGCTTAATAGCCGCTATGGCTAACTTCCTCTGCTACGACGTTTACGATTTGGAACTAACCAAAGTCTCTGATAACTCCGAGTTACGGTCGTTACTTATCCAAACGACAAACCGTTCTATTATTGTCATCGAAGACATTGACTGCTCCGTTGACTTAACGGCAGACAGGACGGCGAAGAAAACGCAAGCGTCTAAACTGTCGTTAAAAAGTAAAAAGCCTCAAACGGCGTCGTTTTCGCGGTGCGAGGAGAGTGGGCGAGTGACGCTTTCGGGGCTTCTGAATTTCACGGACGGGTTGTGGTCATGCTGTGGCGAAGAGAGGATTGTGGTTTTCACTACGAACCATAGGGACAGTGTGGACCCGGCGCTGGTGCGGTGCGGGCGCATGGACGTGCACGTGAGCCTGGGCACGTGCGGGGTGCACGCGTTCCGCGAGCTGGCCAGGAACTACCTCGGCGTGGAGTCGCACGTGCTGTTCGAGGCCGTGGAGGGGTGCATTCGTTCGGGTGGGTCCCTCACGCCCGCGCACGTGGGGGAGATCTTGCTGCGGAATAGAGGGGACGCTGACGTCGCAATGCGGGAGGTGCTGGCGGCCATGCAGGCCCGGATGCTGGCGGCTGCGGCCGCGGCGGAGCAGACCGAGAGCGAGGAGGCCGCGGGGGTGAGGTCGCCGGAGAGCGTGCTGCTGATGGGGTCGCCGGAGAATTGGGACGCGTTGAGTGGCAAGAAGCGGAAGGAGCAGCATGGCGGTGGGAATAATTGGGACAAGAAAGTCAAGTTTTTCGTCAGGTTGAGGTCGTTGACCAGATCTGACCCTGGTAGATGA 1557 0.5819 MEILSQMWSLLGLLTVLQNVLPSQLLALLHSLYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHAHLYLNAANHAPAAACRRLTLSRSPSSNRISFAVAPNHTVHDAFRGHRVTWTHHVDTAQDSLEEKRSFSLRLPKRHRHALLSPYLAHVTARAEEFERVSRERRLFTNNTTGSGSFESGWVSVPFRHPSTFETLALEPELKKTIKNDLTAFAQGKDFYNRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVSDNSELRSLLIQTTNRSIIVIEDIDCSVDLTADRTAKKTQASKLSLKSKKPQTASFSRCEESGRVTLSGLLNFTDGLWSCCGEERIVVFTTNHRDSVDPALVRCGRMDVHVSLGTCGVHAFRELARNYLGVESHVLFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLAAMQARMLAAAAAAEQTESEEAAGVRSPESVLLMGSPENWDALSGKKRKEQHGGGNNWDKKVKFFVRLRSLTRSDPGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01554 518 Pfam Domain associated at C-terminal with AAA 21 119 IPR025753 -
Cca10g01554 518 ProSitePatterns AAA-protein family signature. 351 369 IPR003960 GO:0005524|GO:0016887
Cca10g01554 518 Gene3D - 185 378 IPR027417 -
Cca10g01554 518 MobiDBLite consensus disorder prediction 482 498 - -
Cca10g01554 518 SMART AAA_5 229 381 IPR003593 -
Cca10g01554 518 PANTHER BCS1 AAA-TYPE ATPASE 2 515 - -
Cca10g01554 518 PANTHER OS09G0445700 PROTEIN 2 515 - -
Cca10g01554 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 409 IPR027417 -
Cca10g01554 518 MobiDBLite consensus disorder prediction 477 498 - -
Cca10g01554 518 Gene3D - 379 451 - -
Cca10g01554 518 CDD AAA 230 291 - -
Cca10g01554 518 Coils Coil 440 460 - -
Cca10g01554 518 Pfam ATPase family associated with various cellular activities (AAA) 234 379 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01554 Cca-Chr10 25710934 25713426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01554 195 461 Calmodulin-binding Proteins AT3G56690 27.437 1.15e-06 49.7