LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g01549	ATGGATTCAATTGCTATGGAATCACCACAAGGCTACCCACACTATACAAAGGATGATCTCCACATCATGAAAAGCAAAGGCAACAAGAACAACAAATCTAGAGAAATTGGAATGGAAGCTAGAGGTGGAGGAGAAGTAAGAAGGCTTCACATCATTTACTTCCTTAGTCACATAGGTGGTCGTTCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTGCTCGTAATGGGGTTTATCTAAGAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTGCCTGAGGCTTTTGCTTGGTCCTACAAGAGAAGGTACAAGAGTGGATATGTGTGGCAAGACTTGTTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACGTCCTCAAAGGATCACAAATCCACCCTACCCCATTCGCAACAACAACTCCACATGATGAAAAGAAAACTACTGTTTGTGACATCCATGCTGAGAGGAAATGTCCTCAAGTACAAGTTGTAGAGGACAAACAACAGCAGCCATCTTTAGCAGAAAAACCTCAAATTCAACCCGACCCGGATTTGAAAACGGATACTCCAACAAAAGGGTCATCAGAAATCAGCCAGGACTCATTGGTTTTCAGCTCAGACAGGTCATCTGTGACTGATGATGATTCTTCTAAGGTTGAAGAAGAGAAGCATTTAGAGCTAACAGGCAAAGTTGGTTTGAATGAAATTAAGCAAGAGAAGTTAGAGACTAGCACATTGCCTTCCTTGTATCACAATCTGTTGAGTAAGAAGGGTAGCCGTAAAGATGACCAGAACAAAACTAACTCGCCTGATTCATCCTTGTCCACTGTATCATCATCATCATCTCAATCTTCCTTTACCAAGACCAGAAGCAATTCCACTAGAGTTTCTAGTGTGTTCCGCAATTGGATTACTTGTGGCACGGTGGAAACAAATGATGCAGCCCTGGTCCTGATGAACCCTGCTCAAAAAAAATTCTCCAAGGAGCTTGACAACATACCTGAAATAAAGGGTGAGATTTGTAAGGGTGACAAATTGGGAGGATCAGCCAGGTGTTTTGGGACTTCTTGGAGTACTCATCACCAGAAACAACAATATGGGGCAAGAAAAAGCTTTGATGGAGAAGAAACAACCGGGAGAAGGAAAAAGTTAGGGGAGTTGATAAATCAAACTTCTAGCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGCACAAACACATGAAGTCTTGTAAAGGAATGAAAGCTTTGGGAAAGTCAACTACAATCGTTGAGGAGTCACAACTTCAGACATCATCAACCTCATCCGACACAGATTACTTTTTGACAAACTAA	1380	0.4196	MDSIAMESPQGYPHYTKDDLHIMKSKGNKNNKSREIGMEARGGGEVRRLHIIYFLSHIGGRSDHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPEAFAWSYKRRYKSGYVWQDLLDDDLITPISDNEYVLKGSQIHPTPFATTTPHDEKKTTVCDIHAERKCPQVQVVEDKQQQPSLAEKPQIQPDPDLKTDTPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLELTGKVGLNEIKQEKLETSTLPSLYHNLLSKKGSRKDDQNKTNSPDSSLSTVSSSSSQSSFTKTRSNSTRVSSVFRNWITCGTVETNDAALVLMNPAQKKFSKELDNIPEIKGEICKGDKLGGSARCFGTSWSTHHQKQQYGARKSFDGEETTGRRKKLGELINQTSSKPFGGPICSQCGKSFKPEKMHKHMKSCKGMKALGKSTTIVEESQLQTSSTSSDTDYFLTN	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g01549	459	MobiDBLite	consensus disorder prediction	170	229	-	-
	Cca10g01549	459	MobiDBLite	consensus disorder prediction	274	297	-	-
	Cca10g01549	459	Pfam	Protein SOSEKI, plant	50	329	IPR010369	-
	Cca10g01549	459	PANTHER	F3F20.2 PROTEIN	39	449	-	-
	Cca10g01549	459	PANTHER	UPSTREAM OF FLC PROTEIN (DUF966)	39	449	IPR010369	-
	Cca10g01549	459	MobiDBLite	consensus disorder prediction	190	216	-	-
	Cca10g01549	459	MobiDBLite	consensus disorder prediction	261	297	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Cca10g01549		DUF966	1.1e-37	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g01549	-		-	gmx:100785001	691.034

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g01549	10	25560189	25565470	Cca10g01549	10	25560189	25565470	ECH