Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01542 ATGGTCGCTGCCGCCGATGCTCCTCCTTCGGGCCAGCTGTCTCAGAAGGAGGCGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTCCAAATGGAACGCTATGTCTTCAAGCGCCGCACCGATGGTATATACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTTGCTGCTAGGATTATTGTTGCCATTGAGAACCCTCAGGATATTATTGTTCAGTCTGCCAGGCCTTACGGTCAGAGGGCAGTTCTTAAGTTTGCTCAATACACTGGTGCTCATGCGATTGCAGGAAGGCACACTCCCGGAACTTTCACTAATCAGATGCAGACATCCTACAGTGAGCCTCGTCTTCTAATTTTAACTGATCCAAGAACAGATCATCAGCCCATTGTAGAAGGTGCTCTTGGAAATATACCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGACATTGGGATTCCTGCCAACAATAAGGGGAAGCACAGCATTGGTTGTCTCTTTTGGCTATTGGCTAGGATGGTACTGCAGATGCGGAATACTATTCGTCCAGGGCACAAGTGGGATGTAATGGTAGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACAAGAGGAAGATGAAGCACCAGCTGCCCAAGATTTTGCCATTTCAGACTTCAATGCCGCAGGCATAGGAAGCTTCGCTGCTGATGGGCAATGGCCTGCTGCAGTCGATCAACCTTGGACTGAAGAAGCTCCGCAACCAATCCCAGCAGTTCCTACTAGCTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGTCTGTTCCAGCTCCAGTTCCAGCCCCAGAAGGTGCTGCTGTGCCTGCACCCCAAACTTTTGCTGCTACTGGCTGGGATTAG 930 0.5022 MVAAADAPPSGQLSQKEADIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYSEPRLLILTDPRTDHQPIVEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRNTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPAAQDFAISDFNAAGIGSFAADGQWPAAVDQPWTEEAPQPIPAVPTSWTPETAAAGDWGESVPAPVPAPEGAAVPAPQTFAATGWD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01542 309 Pfam Ribosomal protein S2 23 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 Gene3D - 19 225 - -
Cca10g01542 309 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Cca10g01542 309 MobiDBLite consensus disorder prediction 259 309 - -
Cca10g01542 309 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Cca10g01542 309 Hamap 40S ribosomal protein SA [rps-0]. 10 251 IPR027498 GO:0003735|GO:0006412|GO:0015935
Cca10g01542 309 TIGRFAM uS2_euk_arch: ribosomal protein uS2 15 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Cca10g01542 309 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01542 Cca-Chr10 25288939 25291855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01542 1 287 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.356 8.41e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01542 K02998 - gmx:100818292 527.709