Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01531 ATGGGTGGTGGTCCAATCAAGAACCACCTCATTTTCAATACCCTCATGATTCATGCCATTTCTGACTTTCAGGAATTCCTCTTGAGGAGTGTTATTGTGTTGCCAATGATGACATCAAAGCCTGACAAGAAGATGCCTGATTTAACTGAGATGAACCACAATTCCTCAGATGAGTCACACCCCACTAGTGCTTACAGCAGCTGTCCAACTTCAGGCAACAACTCACCAACTCATCCCACCAAAAACATGGACCAAGCAGCACCAAAAGAAGGCTTAGGAAGTGAAACTGGACACCTGGACCCGCAGGTTTCCAAGCCTGATGCAAAGTTGGAAGGCAAATCAAGACCCCAGAAGCTAATGCCACCAAACAGGAACATATCTGACTCCAACACTCTGCACCAAAGTCCAAGCACAATGAAGTCAAACTCCAATTTTGACCACCATGCAAAGGGATTGCCTACTCCTACCCGCAGTGCTCCAGGGAGTGGCACAAGCTCTCGCTGTGACAGCTTAGAGAGCACAAGTGCACCAATTAGACCACACACTGGGGGTGATGTGAGGTGGGAAGGCATCAACATGGTTTCAAGGGGTGGCCCTATGAATCTGAGCCACTTCAGGCTCCTAAAACGCATTGGTTATGGAGACATTGGAAGTGTGTACCTTGTGGAACTGAAAGGGACTAGGACCTACTTTGCAATGAAGGTGATGGACAAGGCTGCTCTCATAAGCAGGAATAAGCTGCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCCTTCCTCCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTTTGTAGTGGGGGGGATCTTCATTCTCTTAGACAGAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCAACAGAGGTTTTGTTAGCTCTGGAGTATCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTTTAGTCAGAGATGAAGGGCACATCATGCTCTCAGATTTTGATTTGTCCCTCCGCTGCTCCGTCTGTCCTACACTAGTCAAGTCTTCATCTGCCCACGCGAGCAACAATGGTGGTAGTGGTGGCAATGATTCTGGAGGTATACTAAACGATGACCAAGCAACGCAGAGCACTGCTCAAGCATCAAGTTTTTTCCCGCGGATTTTGCCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTCGGCCTACTGGTCGGCGGGGCACGGCTGCCTGAACTGATGGCAGAGCCTACCAATGTGCGTTCAATGTCATTTGTGGGGACACATGAGTATCTTGCTCCTGAGATCATCAAAGGAGAGGGTCATGGTAGTGCAGTAGACTGGTGGACTTTTGGGATCTTCTTGTATGAACTGTTGCATGGAACAACCCCTTTTAAGGGTGCAGGGTATAAAGCCACACTCTTCAATGTTGTTGGACAGCCACTTAGGTTCCCAGAAACTCCCCAAGTCAGTGCTGTGGCTCGTGACCTTATTAGAGGGTTGTTGGTAAAAGAGCCTCAGAAGAGAATTGCATACAAAAGAGGTGCTACAGAGATAAAACAACACCCATTTTTTGAGGGAGTGAACTGGGCTCTAGTTAGAAGTGCCACCCCTCCCCACATACCAGATGCTATAGACTTCTCCAAGTATGCTAGCAAAGACACACCACCACCAGTGGACAAGAAGATGGCAGACATTGCCAATGATAAAAACAGCAAAAATGCTAATTCTGATTCTTACATGGATTTTGAGTATTTTTAG 1806 0.4662 MGGGPIKNHLIFNTLMIHAISDFQEFLLRSVIVLPMMTSKPDKKMPDLTEMNHNSSDESHPTSAYSSCPTSGNNSPTHPTKNMDQAAPKEGLGSETGHLDPQVSKPDAKLEGKSRPQKLMPPNRNISDSNTLHQSPSTMKSNSNFDHHAKGLPTPTRSAPGSGTSSRCDSLESTSAPIRPHTGGDVRWEGINMVSRGGPMNLSHFRLLKRIGYGDIGSVYLVELKGTRTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFTEEAARFYATEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSAHASNNGGSGGNDSGGILNDDQATQSTAQASSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDAIDFSKYASKDTPPPVDKKMADIANDKNSKNANSDSYMDFEYF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01531 601 Gene3D Transferase(Phosphotransferase) domain 1 291 557 - -
Cca10g01531 601 SUPERFAMILY Protein kinase-like (PK-like) 195 559 IPR011009 -
Cca10g01531 601 ProSiteProfiles Protein kinase domain profile. 205 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01531 601 MobiDBLite consensus disorder prediction 157 177 - -
Cca10g01531 601 MobiDBLite consensus disorder prediction 567 601 - -
Cca10g01531 601 MobiDBLite consensus disorder prediction 55 82 - -
Cca10g01531 601 MobiDBLite consensus disorder prediction 39 184 - -
Cca10g01531 601 PANTHER FLIPPASE KINASE 1-RELATED 54 601 - -
Cca10g01531 601 CDD STKc_phototropin_like 203 561 - -
Cca10g01531 601 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 54 601 - -
Cca10g01531 601 MobiDBLite consensus disorder prediction 120 149 - -
Cca10g01531 601 SMART serkin_6 205 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01531 601 Pfam Protein kinase domain 206 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01531 601 Pfam Protein kinase domain 431 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01531 601 Gene3D Phosphorylase Kinase; domain 1 198 290 - -
Cca10g01531 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Cca10g01531 601 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01531 Cca-Chr10 25062551 25066908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01531 171 601 AGC Kinase Gene Family AT1G79250 72.185 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca10g01531 Pkinase 5.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01531 - - gmx:100819001 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01531 10 25062551 25066908 Cca10g01531 10 25062551 25066908 ECH