Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01530 ATGATGCCAGGCAATGGACAGTTAACAGTTCCTCCGGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACCAGAACAAATCGAGCAACTACAGCAGGATTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACTAATTCCAAGAGAATTGGCATGAGGAAAACCCTAGTCTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAGGAAGATGGTTGGGTTGTATGCAGGGTCTTCAAAAAGAAAAACCAAAACCGTGGTTTCCAACAAGAAATGGAAGAAGAAGAGCACTTAACCCACATGAGAGGAAGTGGTCCTTGCCAGGTGCTAGAGCCAAAGCATCACATGCAAGGAGGGCTATATGACTACAACTTTGATGGCACAATGCACCTTCCACAGTTGTTCAGTCCAGAATCAGCAGTACCTCCCACAACTTCCTTGGCCTCATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACCTCTTGAGGCTCACAACCACTGGCTGTGGACTTAACCTTATGCAGCAACAAGGTGAGAGGTTCAATGGTGACTGGTCCTTCTTGGACAAGCTTCTAGCATCCCACCATGGCATGGATCATCATCAGCATCATCCACAAAGCAAGTGTAACCCTCCCACTCATCAAACTGCAGCAACTCCTGTTGGCACTTCAGCCCAGAAATTCCCATTTCATTACCTTGGCTGTGACACTCATGATATTATGAAATTTTCCAAGTAG 978 0.4591 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEMEEEEHLTHMRGSGPCQVLEPKHHMQGGLYDYNFDGTMHLPQLFSPESAVPPTTSLASSMNAMDILECSQNLLRLTTTGCGLNLMQQQGERFNGDWSFLDKLLASHHGMDHHQHHPQSKCNPPTHQTAATPVGTSAQKFPFHYLGCDTHDIMKFSK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01530 325 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN-RELATED 6 312 - -
Cca10g01530 325 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Cca10g01530 325 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Cca10g01530 325 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 312 - -
Cca10g01530 325 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Cca10g01530 325 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Cca10g01530 325 MobiDBLite consensus disorder prediction 277 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01530 Cca-Chr10 25000361 25004030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01530 2 325 NAC Transcription Factor Family AT1G79580 53.003 2.31e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01530 NAM 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01530 - - gmx:100815632 593.578