Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01524 ATGGGAACACCTGTGAACATCATAGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCGTGGATTGATGGTGAGGTGACAGAAATCAGTGGCAGAAATGCCACCATCATTGCCACAAATGGGAAAACTGTGGTGGCAGAAATTTCAAGCATATACCCCAAAGACACAGAGGCACCACCTTCAGGAGTTGATGACATGACCAAGCTAGCATACCTTCATGAGCCAGGAGTCCTGCATAACCTTGCAATTCGTTTTTCCCTCAACGAGATATATACATATACAGGGAATATCTTAATTGCAGTGAATCCGTTTCGAAGACTTCCACACTTGTATGACATCCATATGATGCAGCAGTACAAAGGAGCAGCATTTGGAGAGTTGAGTCCTCATCTTTTTGCTGTAGCAGACACATGTTACAGGGCAATGATGAATGAAAATGGAAGTCAATCCATTTTGGTGAGTGGAGAGAGTGGAGCTGGTAAAACCGAGACAACGAAAATGCTAATGAGATATCTTGCATTCATGGGGGGTAGATCTGCTACAGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCCAATCCAGTGTTGGAAGCATTTGGGAATGCCAAAACTGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCTGGAGCTGCAATTCGTACATATCTCCTTGAAAGGTCCCGAGTTTGCCAAGTCTCTGATCCAGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATGTCAAAAAGTACAAGTTAGGAGATCCAAAGCAATTCCACTATCTTAATCAATCAAACTGTTATGAAGTGTCAAATGTAGCTGATGCAAAAGAATACTTGGAGACCAGAAATGCTATGGATATTGTTGGCATTAGTCAAGAAGAGCAGGATGCTATATTTCGTGTGGTAGCTGCAATCCTCCATCTCGGAAACATTGACTTTGTTAAAGGGAAAGAAGTTGATTCTTCCAAATTGAAAGATGACAAATCACTCTTCCACCTTCGAACAGCTGCAGAGTTATTCATGTGTGATGAGAAATCACTTGAAGACTCACTTTGCAAGCGCGTCATTGTGACTCCTGATGGTAACATTACCAAACCTCTAGACCCAGATTCAGCTGCTTTGAGCCGAGATGCTTTGGCAAAGACTGTGTACTCCAGATTGTTTGATTGGATTGTGGATAAGATTAACAGTTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGATATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTGTGCATCAACCTAACGAATGAGAAATTGCAACAACATTTTAACCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAATTGGAGTTATGTAGAATTTGTGGATAATCAGGATGTTCTTGATCTTATTGAGAAGAAACCGGGGGGAATAATTGCTCTTCTTGATGAAGCCTGTATGTTCCCCAAATCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAAGGACACAAACGCTTTAGCAAGCCAAAACTTGCTCGAACAGACTTCACGATTAACCATTATGCTGGAGATGTCACATATCAAGCAGATTATTTTCTTGATAAAAACAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCAAAGTGCCCATTTGTTGCTAATCTTTTCCCTCCTTTACCAGAGGAGACATCAAAACAATCAAAATTCTCTTCCATTGGTTCACAGTTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAACACAACAGAACCACATTACATAAGATGTGTGAAACCAAATACAGTTTTGCAGCCAGGAATCTTTGAGAACTTCAATGTCTTAAACCAATTAAGATGTGGGGGAGTACTCGAGGCAATAAGAATTAGCTGTGCTGGATATCCAACAAAAAGAACATTTGAAGAGTTTCTTGATCGCTTTGGAATGCTAGCCCCTGATGTCCTTGATGGCTCTGATGAGAAAAAGGCATCTATTGCCATCTGTGATAAGATGGGCCTAAAAGGCTATCAAATGGGGAAAACAAAGGTATTTCTCAGGGCTGGTCAGATGGCTGAATTAGATGCACGAAGAGCCGAAGTCTTAGCTAAAGCAGCTAAACGCATACAGAGACAAATCCGGACGCATTTAACCAGAAAGGAGTTCATCACCCTCAGAAAGGCCACAATTCATATCCAGAAGATTTGGAGAGCCAAACTTGCACGTAAACTCTATGAGCATATGAGGAGGGAAGCAGCTTCTATCCGGATACAGAAACATGTGCGTGCACACAGAGCAAGAATATATTATACATCATTACAAGCATCGGCTATAGTTATTCAATCAGGGTTGAGAGCATTAGCAGCACGAAATGAATATAGATATAGAAGAAGAACAAAGGCTTCAATCAAAATTCAGACACAATGGAGAAGAGCTCAAGCTCTTTCTGATTACAAACAGCAGAAGAAATCAACTGTTACACTTCAATGTCTTTGGAGAGCTAGAATAGCAAGGAAAGAGCTCAGAAAGCTTCGGATGGCTGCAAGGGAAACTGGGGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAGGAGCTAACATGGAGACTAGATATTGAAAAACACATGAGGATGGATCTTGAAGAAGCTAAAGGGCAAGAGATTGCAAAATTGCAAAATGTTTTACAAGAAATGCAAGCTCAGTTAGATGAAGCCCATGCTGCAATTGTACAAGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTACCTGTTGTGGACAACACCAAGCTTGAGTTGTTGAATAAAAATGAGGAGTTGGAGACTGAAGTGGAAGAGTTGAAAAAGAAGATTAAGGAGTTTGAAGAAAGGTGCTCAGGAATTGAAAATGAGAATCAAGCAAGGCTGAAAGAGGCGGAAGAAGCACATCTTAAAGCATCACAACTTCAGGAGACTATTGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCTGAGAACCAGGTTCTATGCCAGCAGGCTTTGGAAGAATCTAAAAATGAAGAGCTCTCTGAAGAGATCAAAATCCTCAAGGATCAAATAGCAAATCTAGAATCAGAGAATGAATTCCTACGGAGCCAGGCAGCAGCTGCTTTGGAGCAGAAAGTTCATCCAGAAATTTTAGAAACAGACCATGAAGTTGCTGTTGTAGAGCAGATGCAACCAAGAGTTATTGCAGATAATGTGACTGCAGTCACTGCACCAATCAAGATTTTGGATAATGGAAATCAAACAGAGGAAGAATGGCATGCAAGAAAAGAACCAAAACCACCAGTCTTGTTTCTTACAAAACAAAGATCACTCACCGACAGGCAGCAGGAAAGTCATGATGCACTGCTCAAGTGCCTCACTGAAGATAAGCGATTTGAGAAGAACAGACCAGCGGTTGCTTGTATTGTGTATAAAGCACTTCTTCATTGGAGATCCCTTGAAGCAGAGAAAACACATATATTTGATAAAATTACACACGTTATCCAATCATCTATAGAGAGTCAAGAAGGAATACATGATCTAGCCTACTGGCTTTCAACAACTTCAACACTTCTGTTTTATCTACAATGCACAATGAAGGCCAGCAATACAACTAAGGCAGTATCACGTAATCGAAACTCCCCCGCCACTTTGTTTGGCAAAATGGCAAAGGGTTTACGTTCATCTTCAATGGGCTTGGGGATTTCAAGTGGCTACAGTGGAATGGTGGACAAGCCGAATGACCAATCTAAAGTAGAAGCCAAGTACCCGGCTATTCTGTTTAAACAACACTTGACTGCATATGTTGAGAAGATATATGGAATGATTCGTGATAGTTTAAAGAAAGAGATTAGTCCATTCTTAAATTTGTGTATACAGGCACCAAGAGCCATAAGGACTAGATCAATAAGAGGGTCCTCCAGAAACATCCATTCAAATATAGTTGCAAAACAACAGGCATTGCATATGCACTGGAAAGGCATTGTGGACAAGTTAGATCACGCCTTGCGAATATTTTCTGATAACTATGTCCCTCCCATCATAACAAGGAAGATATTTAGTCAGGTTTTCTCATTCATGAATGTGCAACTCTTCAATAGTTTGTTGCTTCGTCGTGAGTGTTGTTCCTTTAGCAATGGAGAATATTTGAAGGCAGGTTTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAGATCGGTTTTCTGGGTCGTCTTGGGAAGAACTCAAACACATACGCCAAGCTGTGGGCTTTTTGGTTTTGCATCAAAAGACTCAAAAATCTTTGGATGAGATCACAAACGAACTCTGCCCGGGGTTAAGTATTCCACAAATATATCGTATTGGAACTATGTTCTGGGATGACAAGTATGGAGCACAGGGATTATCTGCAGAAGTCATTAGCAGAATGAGAGTGCTTATGACAGAAGACTCAATAAACATAAACAATAACTCATTCCTTCTGGAGGTGGATTCCAGCATACCATTCTTAATGGAAGAGATGTTCCGGTCCATGAGTGACATTCGCCTATCAGATATGGATGTGGATCCACCACCAATCCTCAGGCAAAGGTCTGACTTCCAATTCTTGTTGCAACAAATGGATAGTGACTCTCAGTGA 4752 0.4059 MGTPVNIIVGSQVWVEDPEDAWIDGEVTEISGRNATIIATNGKTVVAEISSIYPKDTEAPPSGVDDMTKLAYLHEPGVLHNLAIRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMQQYKGAAFGELSPHLFAVADTCYRAMMNENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSATEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPKQFHYLNQSNCYEVSNVADAKEYLETRNAMDIVGISQEEQDAIFRVVAAILHLGNIDFVKGKEVDSSKLKDDKSLFHLRTAAELFMCDEKSLEDSLCKRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCPFVANLFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPDVLDGSDEKKASIAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAAKRIQRQIRTHLTRKEFITLRKATIHIQKIWRAKLARKLYEHMRREAASIRIQKHVRAHRARIYYTSLQASAIVIQSGLRALAARNEYRYRRRTKASIKIQTQWRRAQALSDYKQQKKSTVTLQCLWRARIARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHMRMDLEEAKGQEIAKLQNVLQEMQAQLDEAHAAIVQEREAAKIAIEQAPPVIKEVPVVDNTKLELLNKNEELETEVEELKKKIKEFEERCSGIENENQARLKEAEEAHLKASQLQETIERLELSLSNLESENQVLCQQALEESKNEELSEEIKILKDQIANLESENEFLRSQAAAALEQKVHPEILETDHEVAVVEQMQPRVIADNVTAVTAPIKILDNGNQTEEEWHARKEPKPPVLFLTKQRSLTDRQQESHDALLKCLTEDKRFEKNRPAVACIVYKALLHWRSLEAEKTHIFDKITHVIQSSIESQEGIHDLAYWLSTTSTLLFYLQCTMKASNTTKAVSRNRNSPATLFGKMAKGLRSSSMGLGISSGYSGMVDKPNDQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRAIRTRSIRGSSRNIHSNIVAKQQALHMHWKGIVDKLDHALRIFSDNYVPPIITRKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDRFSGSSWEELKHIRQAVGFLVLHQKTQKSLDEITNELCPGLSIPQIYRIGTMFWDDKYGAQGLSAEVISRMRVLMTEDSININNNSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRQRSDFQFLLQQMDSDSQ 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Cca10g01524 1583 Coils Coil 876 910 - -
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Cca10g01524 1583 SMART DIL_2 1395 1502 IPR002710 -
Cca10g01524 1583 SMART iq_5 756 778 IPR000048 GO:0005515
Cca10g01524 1583 SMART iq_5 733 755 IPR000048 GO:0005515
Cca10g01524 1583 SMART iq_5 829 851 IPR000048 GO:0005515
Cca10g01524 1583 SMART iq_5 781 803 IPR000048 GO:0005515
Cca10g01524 1583 SMART iq_5 852 874 IPR000048 GO:0005515
Cca10g01524 1583 SMART iq_5 804 826 IPR000048 GO:0005515
Cca10g01524 1583 Coils Coil 967 1088 - -
Cca10g01524 1583 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Cca10g01524 1583 CDD MYSc_Myo11 76 719 IPR036018 -
Cca10g01524 1583 Gene3D - 439 623 - -
Cca10g01524 1583 Coils Coil 915 949 - -
Cca10g01524 1583 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Cca10g01524 1583 Pfam DIL domain 1396 1499 IPR002710 -
Cca10g01524 1583 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cca10g01524 1583 PANTHER MYOSIN 19 1048 - -
Cca10g01524 1583 PANTHER MYOSIN 1050 1573 - -
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Cca10g01524 1583 PANTHER MYOSIN-12 19 1048 - -
Cca10g01524 1583 PANTHER MYOSIN-12 1050 1573 - -
Cca10g01524 1583 Gene3D - 252 310 - -
Cca10g01524 1583 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Cca10g01524 1583 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Cca10g01524 1583 Gene3D - 667 729 - -
Cca10g01524 1583 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca10g01524 1583 ProSiteProfiles Dilute domain profile. 1206 1520 IPR002710 -
Cca10g01524 1583 CDD MyosinXI_CBD 1157 1543 IPR037975 GO:0007015
Cca10g01524 1583 ProSiteProfiles IQ motif profile. 830 859 IPR000048 GO:0005515
Cca10g01524 1583 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Cca10g01524 1583 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Cca10g01524 1583 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Cca10g01524 1583 Pfam IQ calmodulin-binding motif 736 754 IPR000048 GO:0005515
Cca10g01524 1583 Gene3D - 732 783 - -
Cca10g01524 1583 Gene3D - 784 831 - -
Cca10g01524 1583 Gene3D - 832 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01524 Cca-Chr10 24736163 24751198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01524 116 1578 Myosins gene family AT2G31900 73.874 0.0 2231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01524 K10357 - gmx:100817933 2887.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01524 10 24736163 24751198 Cca10g01524 10 24736163 24751198 ECH