Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01518 ATGGCATGGCGGCGACATCCCAAGAAACATATAAAATATGAAAAGTTTCGGATAAGACATGCCTTGCATTGGGACAAGCCTTTTGAAAATTTGGAGCAGCAGGAACACATGGAGGAGGTGGTCCAGCAGCAACACTTGGGGGAAGAGGTGAAAAACTTGAGTGTTCAATGTAAGCTTTTGGTATCAGACTTCAACATGACTATTGGAAACCTGGAAATAGGGCTAGCTACGAGGATGAAATGTGCCGCTCATGATGGTCACCTCGACGTTGTTAAACGTTTGATTGGATTTGGGGTAGATCCTAATAAGCCTGATTATGATGGCAGAACACCTTTGCATGTCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAACAAGGAGTAAATATCAATTCCACAGATAAATTTGGAGCCACTCCCTTGCTTGAAGCCATCAAGTATGGACATGAAGAACTAGCATCTTTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGACTGTTGCAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGTCTTGTGGAATCAATCCAAATGCCAAAAATTACGATCACCGTACACCTCTTCACATAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTACTACAAGCAGGAGCAAGTGTTTTATCTAAGGACACGTATGGACCAAATATTGAATGGGGAAATACACCTCTTCTTGAAGCTCATACCGGTGGAAATAGAAATATGATCAAAATGCTCGAATTAAGTTGCTAA 804 0.4067 MAWRRHPKKHIKYEKFRIRHALHWDKPFENLEQQEHMEEVVQQQHLGEEVKNLSVQCKLLVSDFNMTIGNLEIGLATRMKCAAHDGHLDVVKRLIGFGVDPNKPDYDGRTPLHVSASKGYVDISSFLVEQGVNINSTDKFGATPLLEAIKYGHEELASLLVNSGAILTIDDVGNFLCMTVAKKDLDLLKRVLSCGINPNAKNYDHRTPLHIAASQGLITMAELLLQAGASVLSKDTYGPNIEWGNTPLLEAHTGGNRNMIKMLELSC 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01518 267 Pfam Ankyrin repeats (3 copies) 80 169 IPR002110 GO:0005515
Cca10g01518 267 Pfam Ankyrin repeats (3 copies) 180 263 IPR002110 GO:0005515
Cca10g01518 267 ProSiteProfiles Ankyrin repeat region circular profile. 107 139 - -
Cca10g01518 267 ProSiteProfiles Ankyrin repeat region circular profile. 140 171 - -
Cca10g01518 267 SUPERFAMILY Ankyrin repeat 77 263 IPR036770 -
Cca10g01518 267 PANTHER POTASSIUM CHANNEL AKT1 51 265 IPR045319 GO:0005249|GO:0006813
Cca10g01518 267 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Cca10g01518 267 Gene3D - 74 178 IPR036770 -
Cca10g01518 267 ProSiteProfiles Ankyrin repeat region circular profile. 204 235 - -
Cca10g01518 267 ProSiteProfiles Ankyrin repeat profile. 204 236 IPR002110 GO:0005515
Cca10g01518 267 PRINTS Ankyrin repeat signature 108 123 IPR002110 GO:0005515
Cca10g01518 267 PRINTS Ankyrin repeat signature 220 234 IPR002110 GO:0005515
Cca10g01518 267 ProSiteProfiles Ankyrin repeat profile. 140 172 IPR002110 GO:0005515
Cca10g01518 267 PANTHER CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED 51 265 - -
Cca10g01518 267 SMART ANK_2a 107 136 IPR002110 GO:0005515
Cca10g01518 267 SMART ANK_2a 171 200 IPR002110 GO:0005515
Cca10g01518 267 SMART ANK_2a 204 233 IPR002110 GO:0005515
Cca10g01518 267 SMART ANK_2a 140 169 IPR002110 GO:0005515
Cca10g01518 267 SMART ANK_2a 74 103 IPR002110 GO:0005515
Cca10g01518 267 Gene3D - 179 265 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01518 Cca-Chr10 24548615 24551291 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01518 49 235 Ion Channels AT5G37500 48.804 1.01e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01518 K21867 - ccaj:109791617 464.536