Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01517 ATGGTTTGGTTCTTGAGGCAGCAAGATCTCTCCTGGAAAGAGACCTCAATTGTTGCCCTCAGAAACCTTGTTTCTTTCGGTGATCACCGACACGTGGAGGCTCTCGCGGAGATCCAAGGAATGAACCAAGTATTGGCGAAGTTTCTTAACCGAAGGATGTTATTTGGTCAAACCATTGCGAAAGCTTCGTTGGCGGTGGTTTGGCATTTGGTTTGCTCTAGTGAGAGAATGAGATTGAAATTTATCCAAGTGGGAATGGTTTGTTCAATGTTGGAGATTGTCCTTGAGTCGGAGGGGGAAAGAAGCACGTGCGAGAAGGCTTTGGGTGTTTTTGAGTCCCTCTGCGGTTGTGAAGAGGGGAGAGAAGAGGCTTCTGGCAATGCGTTAGCGGTTCCTGTGTTGGTGAAGAAACTGTTGCGGGTTTCGTCGTTGGGGTCGGATTACTCTGTTTCCGCCCTTTGGAAGCTCTGCAAATTTGGAGAGGAGAGGGTTCTGGTTGAGGCGCTTCAAGTGGGTGCCTTTCAGAAGCTGTTGCTAGTTTTGCAGGTTGGTTGTGGCGCTGAGACAAAGGACAAAACCACTCACCTTCTCAAATTGCTTAATCCTTACAGGGATCGACTCCAACTGGAATGCATAGATTCCGATTTCAACAATCTTAAAAGATCCATTTAA 672 0.4732 MVWFLRQQDLSWKETSIVALRNLVSFGDHRHVEALAEIQGMNQVLAKFLNRRMLFGQTIAKASLAVVWHLVCSSERMRLKFIQVGMVCSMLEIVLESEGERSTCEKALGVFESLCGCEEGREEASGNALAVPVLVKKLLRVSSLGSDYSVSALWKLCKFGEERVLVEALQVGAFQKLLLVLQVGCGAETKDKTTHLLKLLNPYRDRLQLECIDSDFNNLKRSI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01517 223 Gene3D - 1 209 IPR011989 -
Cca10g01517 223 PANTHER WDSAM1 PROTEIN 1 222 IPR045185 GO:0061630
Cca10g01517 223 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 222 - -
Cca10g01517 223 SUPERFAMILY ARM repeat 4 184 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01517 Cca-Chr10 24543125 24543817 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01517 4 222 U-box Gene Family AT5G37490 35.747 1.26e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01517 - - vun:114179193 280.026