Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01516 ATGCCTCCTTTTTGTCTTCCGGTAGCTCCCCCGGAGCACTCGTTCGATCCTCAGATTACGAAAAAATTACTGGTGTATCATTTTGACGGGTACAATTCTCATTCTCATACCTTAAAACAGAAATGGTTCTCGGGTGGagaagatggaagaagaagaagaagGGCAAGGGAGGAGTTGGTGACTCCCAACCACTTCCGGTGCCCGATTTCTCTGGATCTAATGAAAGACCCTGTGACGCTGTCCACCGGAATCACCTACGACCGAGAAAGCATAGAAAGGTGGTTCGAAGAAGGAAACTTGACATGCCCCCTCACCAACCAAATCGTCACCCACTTGGACTTCATTCCCAACCACACCCTCCGAATGATGATCCAAGACTGGTGCGTCGATAATCGAACACGTGGCGTCCAAAGAATCCCAACGCCGCCAGTTCCCATCACCCCAAAGGAAGTTCAACACCTCTTTCGGTCGTTGATTCCTTAA 483 0.4741 MPPFCLPVAPPEHSFDPQITKKLLVYHFDGYNSHSHTLKQKWFSGGEDGRRRRRAREELVTPNHFRCPISLDLMKDPVTLSTGITYDRESIERWFEEGNLTCPLTNQIVTHLDFIPNHTLRMMIQDWCVDNRTRGVQRIPTPPVPITPKEVQHLFRSLIP 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01516 160 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 51 156 - -
Cca10g01516 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 139 IPR013083 -
Cca10g01516 160 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Cca10g01516 160 SUPERFAMILY RING/U-box 59 135 - -
Cca10g01516 160 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Cca10g01516 160 CDD RING-Ubox_PUB 65 107 IPR045210 -
Cca10g01516 160 PANTHER WDSAM1 PROTEIN 51 156 IPR045185 GO:0061630
Cca10g01516 160 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01516 Cca-Chr10 24542279 24542761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01516 58 158 U-box Gene Family AT5G37490 59.406 2.98e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01516 - - ccaj:114915328 291.582