Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01515 ATGAAAGACCCTGTGACGCTGTCCACCGGAATCACCTACGACCGAGAAAGCATAGAAAGGTGGTTCGAAGAAGGAAACTTGACATGCCCCCTCACCAACCAAATCGTCACCCACTTGGACTTCATTCCCAACCACACCCTCCGAATGATGATCCAAGACTGGTGCGTCGATAATCGAACACGTGGCGTCCAAAGAATCCCAACGCCGCCAGTTCCCATCACCCCAAAGGAAGTTCAACACCTTCTTCTCACTCTTTATTCCGTTTCCAAGGCCTCGCCTCTCGACCCACACGCCTGCCTTCCGTTGCTGCAAGCAATTCAGAAATGGGGTGCCGAGAGTGAGCGGAACACGCGCTGCATGGAGGACAACGGACTGCCACGTGCATTAGCCTCTGCGTTTCATGCATTCGCTAATCCTTCTCATTCCACTTTGCTTCATCACATTCTCTCGCTTCTCAACTCCATGTTTCCACGTGAATTCCAGGCGCTACAGCATTTGGGCTCTGAAGCTTCTTTACGTTGCATGGTTTGGTTCTTGAGGCAGCAAGATCTCTCCTGGAAAGAGACCTCAATTGTTGCCCTCAGAAACCTTGTTTCTTTCGGTGATCACCGACACGTGGAGGCTCTCGCGGAGATCCAAGGAATGAACCAAGTATTGGCGAAGTTTCTTAACCGAAGGATGTTATTTGGTCAAACCATTGCGAAAGCTTCGTTGGCGGTGGTTTGGCATTTGGTTTGCTCTAGTGAGAGAATGAGATTGAAATTTATCCAAGTGGGAATGGTTTGTTCAATGTTGGAGATTGTCCTTGAGTCGGAGGGGGAAAAACATCGAAACTTAACTCTAAGCCCCTGTTTGGATCTATTGATTTACTATTTACGTAGAAGGAAAGGCGAAGAAAATGGGTATTTGTTTCCGGTAATTTGCAACGATGGAAAGGCGAAGAAAAGGGGGAAGAAGCGTCGTTGCCATCCTCACACAAAAACGAAGAAAAGAGAAGAAAGCCACGTAAGATTTGTGAAAAcccaggcaactttgtacaccaaagctcgacctccgatatga 1062 0.4605 MKDPVTLSTGITYDRESIERWFEEGNLTCPLTNQIVTHLDFIPNHTLRMMIQDWCVDNRTRGVQRIPTPPVPITPKEVQHLLLTLYSVSKASPLDPHACLPLLQAIQKWGAESERNTRCMEDNGLPRALASAFHAFANPSHSTLLHHILSLLNSMFPREFQALQHLGSEASLRCMVWFLRQQDLSWKETSIVALRNLVSFGDHRHVEALAEIQGMNQVLAKFLNRRMLFGQTIAKASLAVVWHLVCSSERMRLKFIQVGMVCSMLEIVLESEGEKHRNLTLSPCLDLLIYYLRRRKGEENGYLFPVICNDGKAKKRGKKRRCHPHTKTKKREESHVRFVKTQATLYTKARPPI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01515 353 CDD RING-Ubox_PUB 1 34 IPR045210 -
Cca10g01515 353 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Cca10g01515 353 Pfam U-box domain 1 59 IPR003613 GO:0004842|GO:0016567
Cca10g01515 353 SUPERFAMILY RING/U-box 1 62 - -
Cca10g01515 353 SUPERFAMILY ARM repeat 95 277 IPR016024 -
Cca10g01515 353 PANTHER WDSAM1 PROTEIN 1 272 IPR045185 GO:0061630
Cca10g01515 353 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Cca10g01515 353 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 272 - -
Cca10g01515 353 Gene3D - 78 303 IPR011989 -
Cca10g01515 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01515 Cca-Chr10 24541072 24542133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01515 1 272 U-box Gene Family AT5G37490 36.630 9.36e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01515 - - ccaj:114915328 702.205