Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01514 ATGGCATGGCGGCGACATCCCAAGAAACATATAAAATATGAAAAGTTTCGGATAAGACATGCCTTGCATTGGGACAAGCCTTTTGAAAATTTGGAGCAGCAGGAACACATGGAGGAGGTGGTCCAGCAGCAACACTTGGGGGAAGAGGTGAAAAACTTGAGTGTTCAATGTAAGCTTTTGGTATCAGACTTCAACATGACTATTGGAAACCTGGAAATAGGGCTAGCTACGAGGATGAAATGTGCCGCTCATGATGGTCACCTCGACGTTGTTAAACGTTTGATTGGATTTGGGGTAGATCCTAATAAGCCTGATTATGATGGCAGAACACCTTTGCATGTCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAACAAGGAGTAAATATCAATTCCACAGATAAATTTGGAGCCACTCCCTTGCTTGAAGCCATCAAGTATGGACATGAAGAACTAGCATCTTTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGACTGTTGCAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGTCTTGTGGAATCAATCCAAATGCCAAAAATTACGATCACCGTACACCTCTTCACATAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTACTACAAGCAGGAGCAAGTGTTTTATCTAAGGACACATGGGGAAATACACCTCTTCTTGAAGCTCATACCGTTGCTAAAGTTTCTCAGTTGGCTGAGTTGTCCAGTAGTATTCATGAAACTCAAGCAACACCAATGTTGCAGTCAAGAAATGAAATTCCCAGAAAGAGGTGTATAGTATTTCCTTTCAACCCATGGGATCAGAAAGAGGAAAGAAAAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTGAAGAGCTTATAAAGGAAGCGTTGAAACATTTGGACATTCCAAATGGTTCCTGTATTTTATCAGAACAAGGTGGCAAAATTCTTTATGTGGACATGATTTACAATGATGAGAAGCTATTTCTGGTGAATGAAGCACAGAATGGGGTGAAAAATTCTGGTTATCCCAGTGTCCAGACACAGAAGTAG 1107 0.4083 MAWRRHPKKHIKYEKFRIRHALHWDKPFENLEQQEHMEEVVQQQHLGEEVKNLSVQCKLLVSDFNMTIGNLEIGLATRMKCAAHDGHLDVVKRLIGFGVDPNKPDYDGRTPLHVSASKGYVDISSFLVEQGVNINSTDKFGATPLLEAIKYGHEELASLLVNSGAILTIDDVGNFLCMTVAKKDLDLLKRVLSCGINPNAKNYDHRTPLHIAASQGLITMAELLLQAGASVLSKDTWGNTPLLEAHTVAKVSQLAELSSSIHETQATPMLQSRNEIPRKRCIVFPFNPWDQKEERKEGVVLWVPQSIEELIKEALKHLDIPNGSCILSEQGGKILYVDMIYNDEKLFLVNEAQNGVKNSGYPSVQTQK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01514 368 ProSiteProfiles Ankyrin repeat region circular profile. 107 139 - -
Cca10g01514 368 Pfam Ankyrin repeats (many copies) 192 242 IPR002110 GO:0005515
Cca10g01514 368 ProSiteProfiles Ankyrin repeat region circular profile. 140 171 - -
Cca10g01514 368 Pfam Ankyrin repeats (3 copies) 80 169 IPR002110 GO:0005515
Cca10g01514 368 PANTHER POTASSIUM CHANNEL SKOR-LIKE 49 352 - -
Cca10g01514 368 PRINTS Ankyrin repeat signature 220 234 IPR002110 GO:0005515
Cca10g01514 368 PRINTS Ankyrin repeat signature 108 123 IPR002110 GO:0005515
Cca10g01514 368 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Cca10g01514 368 ProSiteProfiles KHA domain profile. 280 366 IPR021789 -
Cca10g01514 368 Pfam KHA, dimerisation domain of potassium ion channel 279 348 IPR021789 -
Cca10g01514 368 PANTHER POTASSIUM CHANNEL AKT1 49 352 IPR045319 GO:0005249|GO:0006813
Cca10g01514 368 SUPERFAMILY Ankyrin repeat 58 248 IPR036770 -
Cca10g01514 368 ProSiteProfiles Ankyrin repeat region circular profile. 204 235 - -
Cca10g01514 368 ProSiteProfiles Ankyrin repeat profile. 204 236 IPR002110 GO:0005515
Cca10g01514 368 Gene3D - 70 172 IPR036770 -
Cca10g01514 368 ProSiteProfiles Ankyrin repeat profile. 140 172 IPR002110 GO:0005515
Cca10g01514 368 SMART ANK_2a 107 136 IPR002110 GO:0005515
Cca10g01514 368 SMART ANK_2a 171 200 IPR002110 GO:0005515
Cca10g01514 368 SMART ANK_2a 204 233 IPR002110 GO:0005515
Cca10g01514 368 SMART ANK_2a 140 169 IPR002110 GO:0005515
Cca10g01514 368 SMART ANK_2a 74 103 IPR002110 GO:0005515
Cca10g01514 368 Gene3D - 173 247 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01514 Cca-Chr10 24501430 24503993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01514 20 235 Ion Channels AT5G37500 46.250 9.31e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01514 K21867 - gmx:100798698 475.322