Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01513 ATGAAAGACCCTGTGACGCTGTCCACCGGAATCACCTACGACCGAGAAAGCATAGAAAGGTGGTTCGAAGAAGGAAACTTGACATGCCCCCTCACCAACCAAATCGTCACCCACTTGGACTTCATTCCCAACCACACCCTCCGAATGATGATCCAAGACTGGTGCGTCGATAATCGAACACGTGGCGTCCAAAGAATCCCAACGCCGCCAGTTCCCATCACCCCAAAGGAAGTTCAACACCTTCTTCTCACTCTTTATTCCGTTTCCAAGGCCTCGCCTCTCGACCCACACGCCTGCCTTCCGTTGCTGCAAGCAATTCAGAAATGGGGTGCCGAGAGTGAGCGGAACACGCGCTGCATGGAGGACAACGGACTGCCACGTGCATTAGCCTCTGCGTTTCATGCATTCGCTAATCCTTCTCATTCCACTTTGCTTCATCACATTCTCTCGCTTCTCAACTCCATGTTTCCACGTGAATTCCAGGCGCTACAGCATTTGGGCTCTGAAGCTTCTTTACGTTGCATGGTTTGGTTCTTGAGGCAGCAAGATCTCTCCTGGAAAGAGACCTCAATTGTTGCCCTCAGAAACCTTGTTTCTTTCGGTGATCACCGACACGTGGAGGCTCTCGCGGAGATCCAAGGAATGAACCAAGTATTGGCGAAGTTTCTTAACCGAAGGATGTTATTTGGTCAAACCATTGCGAAAGCTTCGTTGGCGGTGGTTTGGCATTTGGTTTGCTCTAGTGAGAGAATGAGATTGAAATTTATCCAAGTGGGAATGGTTTGTTCAATGTTGGAGATTGTCCTTGAGTCGGAGGGGGAAAGAAGCACGTGCGAGAAGGCTTTGGGTGTTTTTGAGTCCCTCTGCGGTTGTGAAGAGGGGAGAGAAGAGGCTTCTGGCAATGCGTTAGCGGTTCCTGTGTTGGTGAAGAAACTGTTGCGGGTTTCGTCGTTGGGGTCGGATTACTCTGTTTCCGCCCTTTGGAAGCTCTGCAAATTTGGAGAGGAGAGGGTTCTGGTTGAGGCGCTTCAAGTGGGTGCCTTTCAGAAGCTGTTGCTAGTTTTGCAGGTTGGTTGTGGCGCTGAGACAAAGGACAAAACCACTCACCTTCTCAAATTGCTTAATCCTTACAGGGATCGACTCCAACTGGAATGCATAGATTCCGATTTCAACAATCTTAAAAGATCCATTTAA 1194 0.4941 MKDPVTLSTGITYDRESIERWFEEGNLTCPLTNQIVTHLDFIPNHTLRMMIQDWCVDNRTRGVQRIPTPPVPITPKEVQHLLLTLYSVSKASPLDPHACLPLLQAIQKWGAESERNTRCMEDNGLPRALASAFHAFANPSHSTLLHHILSLLNSMFPREFQALQHLGSEASLRCMVWFLRQQDLSWKETSIVALRNLVSFGDHRHVEALAEIQGMNQVLAKFLNRRMLFGQTIAKASLAVVWHLVCSSERMRLKFIQVGMVCSMLEIVLESEGERSTCEKALGVFESLCGCEEGREEASGNALAVPVLVKKLLRVSSLGSDYSVSALWKLCKFGEERVLVEALQVGAFQKLLLVLQVGCGAETKDKTTHLLKLLNPYRDRLQLECIDSDFNNLKRSI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01513 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Cca10g01513 397 Gene3D - 78 382 IPR011989 -
Cca10g01513 397 CDD RING-Ubox_PUB 1 34 IPR045210 -
Cca10g01513 397 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Cca10g01513 397 PANTHER WDSAM1 PROTEIN 1 396 IPR045185 GO:0061630
Cca10g01513 397 SUPERFAMILY ARM repeat 95 356 IPR016024 -
Cca10g01513 397 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Cca10g01513 397 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 396 - -
Cca10g01513 397 Pfam U-box domain 1 59 IPR003613 GO:0004842|GO:0016567
Cca10g01513 397 SUPERFAMILY RING/U-box 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01513 Cca-Chr10 24496496 24497710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01513 1 395 U-box Gene Family AT5G37490 39.950 8.32e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01513 - - ccaj:114915328 552.362