Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01510 ATGCCAACTTTGATTTCACCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTGTTGCACACTAGTGTCAATTGCATGAGCCAGGTGGAACCCCATCATGGTTCCCTCACCCTCTCTAGTGTTGGTTTCCAACCTGAAATTGAACCTAGGAACATAAGCAAATCAGATAAGGTTAAGCCATTGGGTTCTCCCTCTGAGGCTCTCAAGAGCAAAGGAAAGCCCTTTGACATTAACAAGAAGAAAGCTATTAGGGTTGTGGAGAAACAGAAAATTGAGTTTGCCCCTTTTGCGGCAAAGTCATTTTCGGAACTAGGCCTCCCTCATGTGTTGATTGATAGACTAGAGAAGGAGGGTTTTGCCGTTCCAACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACACTAGCTTATCTGCTTCCCATACTCTCGGTTGTTGGTCCACTGAGGAACAAAATTCCTGAAGAtggtggtgatggtgatggtggtgAGAGTGGGAAGAAGTTGGGGATTGAAGCAGTGATTGTTGCTCCTTCCAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAAAGTAGTTCAGCAGCTTGTGGGAGGTGCGAATCGAACTAGACAGGAAGAAGCTCTCAAGAAAAATAAACCCGCCATTGTTGTTGGCACGCCAGGTAGGATAGCAGAGCTCAGCGCATCTGGGAAACTTCGCACTCATGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCGTTCAATTTTCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCGGACCAGAACACAAATTCTAGAAAGGCTGAGAGACAATTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTGACCCCTTTCTTGTTCAAGCTAAGAAAGTTGCCCCACTTGAGACTGTCTCTCCCTCTGAGCCAGTCAATTTGTTGCGGTCTTCACCAGGCTCGAGTCCTAGCTCATCTATGCCATCTCAGGTAGCAGTAGAGAGTCTACCTCCTGCGCTGAAACATTACTACTGTGTAGCAAGGTTGCAGCACAAAGTTGATGCATTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAGCAGCTAAAGGATGTTGTTTTCAAGCTGGAGGCTCGTGGGATGAAAGCTGCTGAGTTACATGGAGATCTTGGGAAGCTTGCGAGGTCAACCACTCTGAAGAAATTCAAGAGTGGTGAGTTGAGAGTCATGGTGACAAATGAATTATCTGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTAGACTTACCAACAGATTCAATTCATTATGCACATCGAGCTGGCCGAACTGGTCGGCTTGGTAGGCATGGTACAGTGCTGACCATATGTGAAGAACCAGAGGTGTTTGTTGTGAAGAAATTACAGAAGCAACTTGGAATACCGATTGCATCCTGTGATTTTACAGATGGGAAGCTACTTGTCACTGAAGAAGAGAAAACAGTAAGCAGTTCCAAAAGATGA 1689 0.4482 MPTLISPRFLLLVGESLHMRRALATSRSVLLHTSVNCMSQVEPHHGSLTLSSVGFQPEIEPRNISKSDKVKPLGSPSEALKSKGKPFDINKKKAIRVVEKQKIEFAPFAAKSFSELGLPHVLIDRLEKEGFAVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLRNKIPEDGGDGDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRILEHVGRRSGADQNTNSRKAERQLIMVSATVPFSVVRAARSWGCDPFLVQAKKVAPLETVSPSEPVNLLRSSPGSSPSSSMPSQVAVESLPPALKHYYCVARLQHKVDALRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKSGELRVMVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRHGTVLTICEEPEVFVVKKLQKQLGIPIASCDFTDGKLLVTEEEKTVSSSKR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01510 562 MobiDBLite consensus disorder prediction 360 380 - -
Cca10g01510 562 CDD DEADc 122 346 - -
Cca10g01510 562 Pfam DEAD/DEAH box helicase 135 331 IPR011545 GO:0003676|GO:0005524
Cca10g01510 562 SMART ultradead3 130 356 IPR014001 -
Cca10g01510 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Cca10g01510 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 345 IPR014001 -
Cca10g01510 562 Pfam Helicase conserved C-terminal domain 404 510 IPR001650 -
Cca10g01510 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Cca10g01510 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 3 554 - -
Cca10g01510 562 Gene3D - 387 548 IPR027417 -
Cca10g01510 562 MobiDBLite consensus disorder prediction 359 380 - -
Cca10g01510 562 Gene3D - 79 347 IPR027417 -
Cca10g01510 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 3 554 - -
Cca10g01510 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 530 IPR027417 -
Cca10g01510 562 SMART helicmild6 429 510 IPR001650 -
Cca10g01510 562 MobiDBLite consensus disorder prediction 64 84 - -
Cca10g01510 562 CDD SF2_C_DEAD 390 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01510 Cca-Chr10 24446040 24448334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01510 112 538 Eukaryotic Initiation Factors Gene Family AT3G19760 23.888 9.32e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01510 - - gmx:100812968 961.829