Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01496 ATGAGAGAACCAACAGCACTATGTCGAACCTCCTTCACCTGCGATTggacatacgacgtgttcctgagcttcagaggggtggacacccgcaagagcttcacgggtaatctctacaactctctctgccaaaagggtatccaaaccttcatagacgaaggactcaacagaggagaagagatcatgccagctcttgggcaagccattagagagtcaaggatcttcattgctgtcttctctgagaactatgcctcctcaacgcactgtttgaacgagcttgttaccatcatggagtgcttggaggaacggggaggacgcttgttttggccggtgttctatggagtggatccgtcgcaggttagataccaaagtgggagttatgcagaagctttggaaaaccatgagaatgatgacaaggtcatgaaatggagagaggctttgtctcgagctgctaatatggctggctggcatttccaacatggATCACAATCAgaatccaagtttattaacaagattgttaaagaggtatctaaacggatcaatcgcagtcttctacatgtagctgacaacccagttggccttgagtctccagtgctgcaagtgacatctctcctcggacaaggctctgaagaaggagttagcatggtgggcatttacggcaccggtggaataggtaaatcatcaattgctcgtgctgtgtgcaacttgctagcttttcagtttgaaggtttgtgttttctttccaacataagagaaagggccaacaaccacgatcttgcacaacttcaagaaacattacttgctgaaacacttggggagaaagatatcaaagtgggggatgttaacagaggaattccaataataaaaaagaggctccacggtaaaaagatccttttgattcttgatgatgttgacaaggtgaagcagttaaaggtacttgcaggggggcgtgattggtttggctctggcagcaaggtcataatcacaacaagagacaagcatttgttgtgcactcatggggttgttaaatcatatgaagttaaagagttgaatgatgaaaaagcccttgaattgtttagttggcatgccttcagaagtaacaaaattgatccgggttatgcacatgtttcaaaacgggcaatttcctatgctcatggtcttccattggctttggaggtaataggttctcacttgtttggcaaaagtttacatgtgtggacatctgcattagataaatatgaaagaatcattcataaagagatccatgaaacacttaaagttagctatgataacttggaagaagaagagaagggaatttttctcgacattgcttgtttcttcaattctttcgagattggcaatgtcaaagaaatgctaaacttgcatggttttcatgcggaaaatggtattcaggtgctgactgacaaatctctcatgaaaattgatggcaatggctgtgtgagaatgcatgatctaattcaagatatgggaagagaaattgtgaggcaggaatcatctgagcctggcagacgcagtagattgtggtttaaccaggatattgttcatgttttggaggaaaataCGGGAACTGATGCAATTGAAGTCATAGTCCTGGACTTGAGTAAAGACAAAAAAGTGCAGTGGAGCGGAAAAGCTTTCAGCCAGATGAAAAACTTGAAAATTCTCATAATCAGAAATGCACACTTTACTAGAGGCCCTAAAAATCTGCCTAATAGTCTGAGAGTGTTTGAGTCATTGAGCTCACTGGATTTTGAAGGCTGCAAGTTCTTAACTGAACTGCCTAGCTTATCTGGAGTACCAAATTTGACGATATTGTCTCTTAATAACTGCACTGATTTAATTAGAATTCATAGTTCAGTTGGATTTCTTGATAAACTTAAGTTATTGAGAGCTCAAGGATGCACCCAGCTAGAAATTTTGGTACCATTCATCTACTTGACATCTCTAGAGACTCTAGATCTGAGGGATTGCTCACGTCTAAAGAGATTCCCAGAAGTGTTGAGAATGATGGAGAATATAAGAGAGGTTTACCTGGATCATACTAATATAGATGAACTGCCATTTTCGATTGGAAATTTTGTTGGGCTTCGACAATTGTTCTTGAGGGATTGCCAAAGGCTGAACCAGCTACCAAGTACTATTCATATATTGCCACAACTTGAGATATTTACGGCTTATGGTTGTGGTTGTAGGGGATATAGATTTAGATTACCTGAAGAAGAAGTGGAAAAAGTGGCCATGTGGCTTGAGATTTCGAATTTATGCTTTCTAGGGACTTTTATAGGCAGCTGCTGCTACAAAATTCTCAAGACAAATGATTGGCAGAAGTGGAACATGCAGATGATACAGCCTTCCCCCTTCATTTTGCCATGGAGGCAGTAA 2400 0.145 MREPTALCRTSFTCDWTYDVFLSFRGVDTRKSFTGNLYNSLCQKGIQTFIDEGLNRGEEIMPALGQAIRESRIFIAVFSENYASSTHCLNELVTIMECLEERGGRLFWPVFYGVDPSQVRYQSGSYAEALENHENDDKVMKWREALSRAANMAGWHFQHGSQSESKFINKIVKEVSKRINRSLLHVADNPVGLESPVLQVTSLLGQGSEEGVSMVGIYGTGGIGKSSIARAVCNLLAFQFEGLCFLSNIRERANNHDLAQLQETLLAETLGEKDIKVGDVNRGIPIIKKRLHGKKILLILDDVDKVKQLKVLAGGRDWFGSGSKVIITTRDKHLLCTHGVVKSYEVKELNDEKALELFSWHAFRSNKIDPGYAHVSKRAISYAHGLPLALEVIGSHLFGKSLHVWTSALDKYERIIHKEIHETLKVSYDNLEEEEKGIFLDIACFFNSFEIGNVKEMLNLHGFHAENGIQVLTDKSLMKIDGNGCVRMHDLIQDMGREIVRQESSEPGRRSRLWFNQDIVHVLEENTGTDAIEVIVLDLSKDKKVQWSGKAFSQMKNLKILIIRNAHFTRGPKNLPNSLRVFESLSSLDFEGCKFLTELPSLSGVPNLTILSLNNCTDLIRIHSSVGFLDKLKLLRAQGCTQLEILVPFIYLTSLETLDLRDCSRLKRFPEVLRMMENIREVYLDHTNIDELPFSIGNFVGLRQLFLRDCQRLNQLPSTIHILPQLEIFTAYGCGCRGYRFRLPEEEVEKVAMWLEISNLCFLGTFIGSCCYKILKTNDWQKWNMQMIQPSPFILPWRQ 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01496 799 Gene3D - 13 177 IPR035897 -
Cca10g01496 799 PRINTS Disease resistance protein signature 383 397 - -
Cca10g01496 799 PRINTS Disease resistance protein signature 290 304 - -
Cca10g01496 799 PRINTS Disease resistance protein signature 214 229 - -
Cca10g01496 799 PRINTS Disease resistance protein signature 650 666 - -
Cca10g01496 799 Pfam NB-ARC domain 197 430 IPR002182 GO:0043531
Cca10g01496 799 Gene3D - 348 432 IPR042197 -
Cca10g01496 799 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 155 IPR035897 -
Cca10g01496 799 Gene3D Ribonuclease Inhibitor 524 763 IPR032675 -
Cca10g01496 799 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 728 IPR044974 GO:0006952
Cca10g01496 799 CDD AAA 217 331 - -
Cca10g01496 799 SUPERFAMILY L domain-like 487 743 - -
Cca10g01496 799 ProSiteProfiles TIR domain profile. 16 179 IPR000157 GO:0007165
Cca10g01496 799 Pfam TIR domain 18 180 IPR000157 GO:0007165
Cca10g01496 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 442 IPR027417 -
Cca10g01496 799 SMART till_3 17 152 IPR000157 GO:0007165
Cca10g01496 799 PANTHER ARCHAEAL ATPASE 28 728 - -
Cca10g01496 799 Gene3D - 178 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01496 Cca-Chr10 23918530 23923401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01496 12 734 WRKY Transcription Factor Family AT4G12020 29.924 4.70e-83 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01496 - - lja:Lj6g3v0936950.1 1047.34