Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01493 ATGGAGACTCGTGCAAAGAGAAAGGCAAAAGCTTCTTCTTCCGTAGTCTTATACCCCAAACGACACCGTGTTGTGTTGGGTGAGTTTCTCGATTTCCCAAACCTCCATGAAAATCCTTGCAAAGAGAAACTTCAATCTCAGAAGAACCCATCTCCCACAAACAAAGCCCTTTTTTCTTCTGGGATTGATGAATCTTATGTTTCCCATATTGATGAGTATCTTTATGAGATGGAGAGAAAGAGAAGGCCAATGATGAATTACATTGAGAAAGTTCAGAAAACAGTTACATCAAGCATGAGAGCAATATTGGTGGATTGGTTAGTGGAGGTTGCTGAAGAGTACAAACTTCTCTCGGATACCCTTCATCTCTCTGTTTCATACATTGATAGATTTTTATCGGTTAATCCTATGACTAAATCGAGACTACAGTTGTTAGGTGTTTCGTCAATGCTCATTGCTTCTAAGTATGAGGAAATTGACCCACCAAGTGTGGATCAATTCTGCAGTATTACTGATAACACTTATGATAAAGAAGAGGTCATAAAGATGGAAGCTTCCATACTCAACTCCCTAAATTTTGAAATGGGAAATCCTACTGTAAACACCTTTCTAAGGAGATTTGTTGATGTTGCTTCTGAAGATCAAAAAATCCCAAATTTGCAGATTGAATTTTTGAGCAACTATCTTACTGAGTTGAGTCTGTTGGACTATGATTGTATAAGATTCTTGCCTTCTATTGTGGCTGCATCTGTTATATTTCTTGCAAGATTTATTATCTCACCTAAAGTGCATCCTTGGACTTCTTCCCTTTGTGAATGTTCGGGTTACAAATCAGATGAGTTGAAAGAATGTGTTCTCATTTTACATGATCTGTATCTCTCAAGAAAAGCACCGGATTTTAAAGCTGTTCGAGACAAATACAAACAACATAAGTTTAAATACGTGGCAAATTTGCCTTCTCCTCCCTTTATACCGAGTTGTTACTTTGAAGACCAGTGA 999 0.3764 METRAKRKAKASSSVVLYPKRHRVVLGEFLDFPNLHENPCKEKLQSQKNPSPTNKALFSSGIDESYVSHIDEYLYEMERKRRPMMNYIEKVQKTVTSSMRAILVDWLVEVAEEYKLLSDTLHLSVSYIDRFLSVNPMTKSRLQLLGVSSMLIASKYEEIDPPSVDQFCSITDNTYDKEEVIKMEASILNSLNFEMGNPTVNTFLRRFVDVASEDQKIPNLQIEFLSNYLTELSLLDYDCIRFLPSIVAASVIFLARFIISPKVHPWTSSLCECSGYKSDELKECVLILHDLYLSRKAPDFKAVRDKYKQHKFKYVANLPSPPFIPSCYFEDQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01493 332 CDD CYCLIN 99 188 IPR013763 -
Cca10g01493 332 CDD CYCLIN 198 289 IPR013763 -
Cca10g01493 332 Pfam Cyclin, C-terminal domain 198 320 IPR004367 -
Cca10g01493 332 SMART Cyclin_C_2 198 321 IPR004367 -
Cca10g01493 332 PANTHER CYCLIN-A3-1-RELATED 64 331 - -
Cca10g01493 332 Gene3D - 83 196 - -
Cca10g01493 332 Gene3D - 70 317 - -
Cca10g01493 332 SUPERFAMILY Cyclin-like 198 323 IPR036915 -
Cca10g01493 332 SUPERFAMILY Cyclin-like 66 195 IPR036915 -
Cca10g01493 332 SMART cyclin_7 202 290 IPR013763 -
Cca10g01493 332 SMART cyclin_7 105 189 IPR013763 -
Cca10g01493 332 Pfam Cyclin, N-terminal domain 72 195 IPR006671 -
Cca10g01493 332 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Cca10g01493 332 PANTHER CYCLINS 64 331 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01493 Cca-Chr10 23812100 23814230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01493 3 331 Core Cell Cycle Gene Families AT5G43080 56.891 9.94e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01493 K06627 - gmx:547779 494.582