Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01478 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACAGATGAAGAGCTTGTTGCTTACTACTTGGAAAGGAAAATAACTGGTCGCTCAATAGAGCTTGACATCATCGCTGAAGTTGATTTATACAAGTGTGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACAGGGCAACACAAGCTGGATACTGGAAAGCAACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAAACATTGGTATATTACAAAGGTAGAGCACCACATGGGATTAGAACCAACTGGGTTATGCATGAATATCGTTTAATTGAATCAGTTCCTGGTGCTGCTCTCTCATCTTTGAAGGATTCATATTCGTTGTGTCGTATTTTCAAGAAGACGATTCAAATTCCAGCTAAACCTAAAGAAGAAGAACAAGCCGAGGATGCAAAGAAGCAATCCATGTGGATCTCAGAAGAACAAGTGCTAGGCGAAGACTCAAGTGGCACTGAGATTTCTAGAGAAATGGAAACTGTTGATGACAAAGTTCTCAATCATCATGAACACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACGTGTACACCAACAGATACCGGTATAGCAGAAGATTTTCAACCACATTTCGCTTGTGATGAAGCAAACAGTGCAGCTAATTCATACACAATGGGAATAGGATACCCTCCAAGTCTGTTTCAGGATGTAGAAATACCTACCTATGCTGGCATGCATTATCAACTTCCATACACACCTTTGGTGCTGGAAGATTTCCCACAAATAAATTTACCAGAGACAAAATCAACGAAGCCAGAAATGACTGATGATTGCATGTTATATGACAGATACAAGGACTGTATGAATGGAACCCTAGAAGAGATCATCTCTTTGTGTTGCACACAAGATAATTCCGTCCCTTTTCCCATGCTAGAATGA 1041 0.4188 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKPKEEEQAEDAKKQSMWISEEQVLGEDSSGTEISREMETVDDKVLNHHEHPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSAANSYTMGIGYPPSLFQDVEIPTYAGMHYQLPYTPLVLEDFPQINLPETKSTKPEMTDDCMLYDRYKDCMNGTLEEIISLCCTQDNSVPFPMLE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01478 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 302 - -
Cca10g01478 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Cca10g01478 346 MobiDBLite consensus disorder prediction 164 196 - -
Cca10g01478 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Cca10g01478 346 MobiDBLite consensus disorder prediction 164 179 - -
Cca10g01478 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Cca10g01478 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 302 - -
Cca10g01478 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01478 Cca-Chr10 23174656 23178545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01478 1 335 NAC Transcription Factor Family AT1G54330 51.190 2.91e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01478 NAM 1.1e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01478 10 23174656 23178545 Cca10g01478 10 23174656 23178545 ECH