Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01454 ATGGAGCAAACCGGGCCCAGGAGATCAGCAAGATTGGCCGGTTCACGTCCTCAAACCCATGCTTACCTAACAAACCATCGTAAACGCAACTCTAAAGCCCATCTCACAGGCCCACACAAACGCACTCAGCCCATGCCCAACCCCACCAATTTTGAAGCCCATTCAACCATCCCCAcaggcccaccccagcaaagcatgcccgagcccagcctgccaagcccgccaagcccacccaggcccaagccCATCTTCAACGTGCATAGCCAACTCTTGAACTTCAGGGCCCAACAGCTCCAAGAGGTTAAGAACATCACCGATTTCAAGACCCACGCACTGCCCCTAGAACATATAAAGAGGATCATGAAATATGATGAAGATGTTGACGTTATTTCCTCCGATGCATGTGTCGTGTTCTCCAAAGCATGTGAGATGTTCATCAAACAACTCACGTTGAGGTCTTGGTTCCATGTTGAGGAGAACAAGAAAGAAACCGTCCAAAGGTGTCACATTGCAACAGCAATTTCTCACCCTGTTGAATATGACTTTCTCACAGACACTGTTCCTAGAGATGACATTGATGTGCACATTGATACCCAAATGGGGCAAGGCCCATAG 615 0.4179 MEQTGPRRSARLAGSRPQTHAYLTNHRKRNSKAHLTGPHKRTQPMPNPTNFEAHSTIPTGPPQQSMPEPSLPSPPSPPRPKPIFNVHSQLLNFRAQQLQEVKNITDFKTHALPLEHIKRIMKYDEDVDVISSDACVVFSKACEMFIKQLTLRSWFHVEENKKETVQRCHIATAISHPVEYDFLTDTVPRDDIDVHIDTQMGQGP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01454 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 112 174 IPR003958 -
Cca10g01454 204 MobiDBLite consensus disorder prediction 1 84 - -
Cca10g01454 204 Gene3D Histone, subunit A 84 189 IPR009072 GO:0046982
Cca10g01454 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED 75 199 - -
Cca10g01454 204 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 75 199 - -
Cca10g01454 204 SUPERFAMILY Histone-fold 62 183 IPR009072 GO:0046982
Cca10g01454 204 MobiDBLite consensus disorder prediction 22 36 - -
Cca10g01454 204 MobiDBLite consensus disorder prediction 42 61 - -
Cca10g01454 204 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01454 Cca-Chr10 22246357 22246985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01454 90 192 CCAAT-HAP5 Transcription Factor Family AT1G56170 57.282 4.40e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca10g01454 CBFD_NFYB_HMF 1.7e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01454 K08066 - aprc:113855583 161.384