Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01435 ATGGATTGGCTTGGTTGGCCCCAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCTTATGTAACTTGCCCTTCAAGGAATATACTGATCCTCTCAGAGGTGCTCTTAACCTTGCTGTGAAGTTGCCAAATGATTGTCTAAAGCCAGACATGGGGCCTAAGACATATATTGCTTATGGATATCCTCAGGAGCTTGGGCGTGGTGATTCAGTGACTAAGCTCCACTGTGATATGTCGGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGGAATTGGATTCTAATAAACTTGCTGCAATTGAGAGTTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTACATGGTGATGATCAGGATGGAGAAACTAATTTTGACATGCTTAATAATTCATCTTCTATCATAAATGTTCTGGACAAGCAAAATAGTGTTCAAGTTATGGAACATGAAGAGCTCAAGGGGGCTGACAAAGTAAAAATAAAACAAGAAAATGACTTGTTTGGAGGGGATGCTTCTGAAGGTGCTCTCTGGGATATTTTTCGGATGCAGGATGTACCTAAATTGCAAGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCTATTATTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACATTCTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGGTAAATGGTTTATTGTAG 849 0.4005 MDWLGWPQILKLKDWPPSNLFEEQLPRHCAEFLCNLPFKEYTDPLRGALNLAVKLPNDCLKPDMGPKTYIAYGYPQELGRGDSVTKLHCDMSDAVNVLTHIAEVELDSNKLAAIESLKQKHFEQDKRELHGDDQDGETNFDMLNNSSSIINVLDKQNSVQVMEHEELKGADKVKIKQENDLFGGDASEGALWDIFRMQDVPKLQEYLKKHFREFRHVYYCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKVNGLL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01435 282 SUPERFAMILY Clavaminate synthase-like 11 276 - -
Cca10g01435 282 ProSiteProfiles JmjC domain profile. 44 282 IPR003347 -
Cca10g01435 282 Pfam JmjC domain, hydroxylase 190 279 IPR003347 -
Cca10g01435 282 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 277 IPR045109 GO:0032454|GO:0033169
Cca10g01435 282 SMART cupin_9 25 282 IPR003347 -
Cca10g01435 282 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 2 277 - -
Cca10g01435 282 Gene3D Cupin 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01435 Cca-Chr10 21572739 21574713 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca10g01435 JmjC 1.8e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01435 K15601 - ccaj:109814626 577.015