Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01434 ATGAGGCTCCTTCTTCTCTTCTCTTGCTTGTTTTATGCTGTTTCAGCACTCACCTCTGATGGGGTTACTCTCTTGTCACTCATGAAACACTGTACATCCTTGCCTCATTCCATAAACACCACCTGGCTTGCCTCTGATTCCACTCCATGCTCCTCTTGGGTAGGAGTTCAATGTAACCATGCCCACAATGTTGTCTACCTTAACCTCACGGGTTTTGGGATTGCTGGCCAGTTAGGACCTGAAATTGGAAATATCACTTGGCTACAACGCTTAGACCTTACTGATAACAACTTCCATGGCCAAATACCTGACACATTCAAAAACTTGCACAACCTCAAGTTTCTCAGCCTTTCATATAATCAACTGTGTGGCGAAATTCCAGATTCCTTGACTCAAATCTCTCCACTACATCTTGTTGATCTCTCTCATAACAATATAAACGGTTCCATTCCCACAAGTATTGGGAACACGACTCAGCTCTTATGGCTGTATCTTCATAGTAACAACTTGTCAGGGACAATTCCCTCATCCATAGGGAACTGCAGTAAATTACAACACTTGTTTTTGGATAGAAATCAGTTGGAGGGTATCCTGCCTCAGAGTCTAAACAATCTCAATGATCTTGCTTCTTTTGGCGTCCCCAGAAATAAACTTACGGGTACCATTACTTTGGGTTCCAAAAATTGTAAAAATTTACAGTATTTGGATCTCTCGTTCAATGAGTTTAGTGGAGGCCTTCCCTCAAGCTTGGGGAACTGTAGTGGTTTATCAAAATTTGCTGCAGTGAACTGCAATTTAGTTGGGAATATTCCAGCCTCCTTTGGCCTACTAACCAAGCTTTCTATTCTACACCTTCCTGAGAACCATTTATCTGGAAAAATACCTCCAGAAATTGGTAACTGCAAGTCCTTGGAAGAGTTGCATCTGTATTCCAATAGACTTGAGGGAAACATTCCAAGTGAACTGGGAAAACTAAGTAAACTGGTGGATCTTGAATTGTTTACCAATCAATTGACAGGTGAAATTCCCCTTAGTATTTGGAAGATTAAAGGTCTTGAGCATCTCCTTGTGTATAATAATAGTCTTTATGGGGAACTACCTTTGGAGATGACGGAGCTCAAGAAATTGAAAAACATCTCATTGTTTAACAACCAGTTCTCCGGAGTCATACCTCAAAGCTTGGGAATTAACAGCAGTTTAGTTCAGTTGGACTTTACTAATAATAAATTCAGTGGTAGCATACCTCCTGATGTTGGGAGCTGTACAACTCTTGGAAGGTTAATTCTGAAACAAAATAATTTTACTGGGCCTCTTCCTGATTTTGAAAGCAATCCAAATCTTGCATATATGGATATCAGCAACAACAAAATCCATGGAGCAATTCCATCAAGTTTGGGAAATTGCAGAAGTCTCACTGACTTAAATTTGTCCATGAACAAATTTACAGGGCTTATACCCTCAGAGTTGGGGAACCTTGTGAATCTTCGGATTCTGAATCTCGCTCACAACAACTTAGAGGGTCCTTTGCCCTCTCAGCTGTCAAACTGTGCCAAAATGGATATGTTTGACGTTGGATTCAATTTCCTAAATGGTTCATTATCAAGTGTGCAGAGCTGGACGGAGCTAACAAAATTAATTTTGAGTGAGAATCACTTTAGTGGGGGAATCCCAGATTTCTTGTCGGAATTTAAAATGCTTTTTGAACTACAACTTGGTGGCAATATGTTTGGAGGAAAAATTCCTAGATCGGTTGGAACATTGCAGAATTTGATGTATGGTATGAATCTAAGTTCAAATGGACTGATAGGCGACATTCCTGCAGAGATTAGGAACCTGAAAAAGTTGCAAGCACTGGATCTTTCCCAAAATAATTTGACAGGGAGCATAGAAATTCTTGGTGAACTATTCTCCTTACTTGAACTCAATATTTCATTCAATTCTTTTGGTGGTCGTGTACCAAAGAAGCTGATGAAGTTGCTTAATTCTCTTTCTCCCTGGTCATCATTTATGGGCAATCCTGGTCTGTGTATCAGTTGTTCAGCATCTGATGGCTTAGCTTGCACTGAAAACAGCTCTATAAAACAATGTGATGATAACAAATCAACAAAACAGAAAGGCCTCAGTAATGTTCAAATTGTGATGATAACTCTTGGGCCCTCAATATTTGTTGTTTTGCTGTTGCTGCGATTAGTTTATGTTCATGATTTTGTTTTTGGCAGCAAAGCTAAGCAGCAAATGCATGTCTCTGATGAAGAGGGTTCCTCATCCCTTCTTAACACTGTCATGGAGGCTACAGCAAACCTAAATGATCGGTATATTATTGGCAGAGGAGCACATGGAGTTGTTTATAAAGCCTCGGTGGGTCCTGACAAAGCTTTTGCTGTGAAGAATATAGAATTTGCTGCAAGCAAAATTAAGAAATTGAGCATGGTAAAAGAAATTCAAACCCTTGAAAGAGTTAGGCACCGAAATCTGCTCAAATTGGAAGGCTTTTGGTTTGGAAAAGATAATGGTCTAATTTTATACAGCTACATGCCAAATGGGAGTCTCCATGATGTTTTGCATGAAAGGACCCCACCAATGACCTTAGAGTGGAATGTTCGGTATAAGATAGCAGTTGGAATTGCTCATGGATTGGCTTATCTCCATCATGACTGTGATCCTTCCATAGTGCACCGAGACATCAAGCCAACCAATATACTTCTAAACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAGCTCTTGGATCAGCCTTCGGCTTCAAATCCTTCCATTTGTGTGCCGGGTACAATTGGTTACGCAGCACCAGGTCTATGTGGATGGAAACTGGAGAAGTTAATGAAATTGTTGATGCAAGCCTTGCGAAGGAATTTACAGATACCCATATGA 2901 0.403 MRLLLLFSCLFYAVSALTSDGVTLLSLMKHCTSLPHSINTTWLASDSTPCSSWVGVQCNHAHNVVYLNLTGFGIAGQLGPEIGNITWLQRLDLTDNNFHGQIPDTFKNLHNLKFLSLSYNQLCGEIPDSLTQISPLHLVDLSHNNINGSIPTSIGNTTQLLWLYLHSNNLSGTIPSSIGNCSKLQHLFLDRNQLEGILPQSLNNLNDLASFGVPRNKLTGTITLGSKNCKNLQYLDLSFNEFSGGLPSSLGNCSGLSKFAAVNCNLVGNIPASFGLLTKLSILHLPENHLSGKIPPEIGNCKSLEELHLYSNRLEGNIPSELGKLSKLVDLELFTNQLTGEIPLSIWKIKGLEHLLVYNNSLYGELPLEMTELKKLKNISLFNNQFSGVIPQSLGINSSLVQLDFTNNKFSGSIPPDVGSCTTLGRLILKQNNFTGPLPDFESNPNLAYMDISNNKIHGAIPSSLGNCRSLTDLNLSMNKFTGLIPSELGNLVNLRILNLAHNNLEGPLPSQLSNCAKMDMFDVGFNFLNGSLSSVQSWTELTKLILSENHFSGGIPDFLSEFKMLFELQLGGNMFGGKIPRSVGTLQNLMYGMNLSSNGLIGDIPAEIRNLKKLQALDLSQNNLTGSIEILGELFSLLELNISFNSFGGRVPKKLMKLLNSLSPWSSFMGNPGLCISCSASDGLACTENSSIKQCDDNKSTKQKGLSNVQIVMITLGPSIFVVLLLLRLVYVHDFVFGSKAKQQMHVSDEEGSSSLLNTVMEATANLNDRYIIGRGAHGVVYKASVGPDKAFAVKNIEFAASKIKKLSMVKEIQTLERVRHRNLLKLEGFWFGKDNGLILYSYMPNGSLHDVLHERTPPMTLEWNVRYKIAVGIAHGLAYLHHDCDPSIVHRDIKPTNILLNSDMEPHIADFGIAKLLDQPSASNPSICVPGTIGYAAPGLCGWKLEKLMKLLMQALRRNLQIPI 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01434 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Cca10g01434 966 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Cca10g01434 966 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Cca10g01434 966 Pfam Leucine rich repeat 445 505 IPR001611 GO:0005515
Cca10g01434 966 Gene3D Ribonuclease Inhibitor 16 167 IPR032675 -
Cca10g01434 966 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 407 940 - -
Cca10g01434 966 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Cca10g01434 966 SUPERFAMILY RNI-like 318 667 - -
Cca10g01434 966 Gene3D Transferase(Phosphotransferase) domain 1 845 949 - -
Cca10g01434 966 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515
Cca10g01434 966 SUPERFAMILY L domain-like 44 387 - -
Cca10g01434 966 Pfam Protein kinase domain 773 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01434 966 Gene3D Ribonuclease Inhibitor 168 273 IPR032675 -
Cca10g01434 966 SMART LRR_sd22_2 492 518 - -
Cca10g01434 966 SMART LRR_sd22_2 277 309 - -
Cca10g01434 966 SMART LRR_sd22_2 325 354 - -
Cca10g01434 966 SMART LRR_sd22_2 229 255 - -
Cca10g01434 966 SMART LRR_sd22_2 109 138 - -
Cca10g01434 966 SMART LRR_sd22_2 612 633 - -
Cca10g01434 966 SMART LRR_sd22_2 181 207 - -
Cca10g01434 966 Gene3D Ribonuclease Inhibitor 279 442 IPR032675 -
Cca10g01434 966 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 94 - -
Cca10g01434 966 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 84 417 - -
Cca10g01434 966 Gene3D Ribonuclease Inhibitor 443 700 IPR032675 -
Cca10g01434 966 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Cca10g01434 966 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 3 94 - -
Cca10g01434 966 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 84 417 - -
Cca10g01434 966 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 407 940 - -
Cca10g01434 966 SMART serkin_6 768 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01434 966 SMART LRR_typ_2 302 325 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 277 301 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 182 204 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 229 253 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 612 638 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 109 133 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 157 181 IPR003591 -
Cca10g01434 966 SMART LRR_typ_2 492 516 IPR003591 -
Cca10g01434 966 SUPERFAMILY Protein kinase-like (PK-like) 757 942 IPR011009 -
Cca10g01434 966 ProSiteProfiles Leucine-rich repeat profile. 614 636 IPR001611 GO:0005515
Cca10g01434 966 Gene3D Phosphorylase Kinase; domain 1 738 844 - -
Cca10g01434 966 ProSiteProfiles Protein kinase domain profile. 768 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01434 Cca-Chr10 21313871 21317888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01434 13 940 Receptor kinase-like Gene Family AT1G73080 49.949 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca10g01434 Pkinase 9.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01434 - - ccaj:109807212 1875.52