Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01430 ATGGCAGAAGAAGACGACTTTTGGAAAGCGGAATGGGTGGAAGTGGAGCGCAAAATCGCGGAAGGCGAATCCAAGCCCTTCTCCGTCGCACTTGCGGAGGAGAAGCTCAACAGGCTCATCCTATCCGAGGGAGAATCCTCAAACACCGCCGCAGACAAACAAGAAAACCAAACCAACGTTAACCTCAAAACCTCGGACGACGTGGCGTTCGAGGTCAAAGCCTGGATCGCGAAGGAGATGGAGACGGTGCAGTCCTTCATCGACACCAGCGGCGACAGCACCGTCGTGATCCCGCTCCCCAACGTGACCAGCCGCGAACTCCGCCACATCCTGAAGTACTGCGAGGAGCACCGCCGCATCGGCGACGACAAGAAGGCGCTGAAGGAGTTCGACGACAATTTCATGAAGGCGCTGAGCCCCGACGAGATGAAGGAGCTTCTTTTCGCGGCAAACTACCTCAACATGAAAGAATTTCTTGATTTTCTTTGCGGCGGAATCGCCCAGATGCTGGAGAACAAGAGCGTGGAGTTTGCCAGAGATTTCTTCGGCATCGAGAACGACTTCACTCCAGAGGAGGAGGCGTCGTATCGTGAAGCCAACGCCTGGGCATTCGAGAACATTGACGACAGTAGTTAG 636 0.5503 MAEEDDFWKAEWVEVERKIAEGESKPFSVALAEEKLNRLILSEGESSNTAADKQENQTNVNLKTSDDVAFEVKAWIAKEMETVQSFIDTSGDSTVVIPLPNVTSRELRHILKYCEEHRRIGDDKKALKEFDDNFMKALSPDEMKELLFAANYLNMKEFLDFLCGGIAQMLENKSVEFARDFFGIENDFTPEEEASYREANAWAFENIDDSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01430 211 SUPERFAMILY POZ domain 60 118 IPR011333 -
Cca10g01430 211 Pfam Skp1 family, dimerisation domain 156 203 IPR016072 GO:0006511
Cca10g01430 211 PANTHER SKP1 57 206 IPR016897 GO:0006511
Cca10g01430 211 SUPERFAMILY Skp1 dimerisation domain-like 127 202 IPR036296 GO:0006511
Cca10g01430 211 SMART skp1_3 57 155 IPR001232 GO:0006511
Cca10g01430 211 Pfam Skp1 family, tetramerisation domain 60 118 IPR016073 GO:0006511
Cca10g01430 211 Gene3D Potassium Channel Kv1.1; Chain A 56 205 IPR011333 -
Cca10g01430 211 PANTHER SCF UBIQUITIN LIGASE, SKP1 COMPONENT 57 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01430 Cca-Chr10 21155829 21156600 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01430 K03094 - gmx:100811974 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01430 10 21155829 21156600 Cca10g01430 10 21155829 21156600 ECH