Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01427 ATGGATAAACCAGAGCAGGCTcaacaacagcaccaccagcaacaacagcaTGTGATAGGAGTTGCTGCAGGTGCTAGCCAAATGGCCTATTCTTCCCACTACCAGACTGCTCCCATGATGGCTTCCGGCACACCCGCTGTAGCTGTTCCTTCCCCAACACAGCCTCCACCTGCCTTCTCTAGTTCCGCTCACCAGCTTGCGTACcagcaagcacagcatttccaccatcaacagcagcaacaccaacagcagcagcTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGTCTCCCACTTGCTCGGATAAAAAAGATAATGAAAGCCGACGAAGATGTCCGGATGATTTCAGCTGAAGCTCCAGTCATCTTCGCAAAGGCGTGTGAAATGTTCATATTAGAGTTGACACTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATATAGCAGCTGCCATTTCAAGAAACGAAGTTTTCGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTAGTGGGTTCTCCAGCTGATATGCCTTATTACTATGTCCCTCCACAGCATCCTGCAGGACCTCCTGGAATGATCATGGGAAAGCCGGTTGACCAAGCGGCGCTATATCCGACGCAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCATTCTcaaccgcagcaacagcaaccaccccaacaacaacaaACAGACTCTTGA 810 0.4012 MDKPEQAQQQHHQQQQHVIGVAAGASQMAYSSHYQTAPMMASGTPAVAVPSPTQPPPAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNEVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPAGPPGMIMGKPVDQAALYPTQQPRPPMAFMPWPHSQPQQQQPPQQQQTDS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01427 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 10 263 - -
Cca10g01427 269 SUPERFAMILY Histone-fold 64 179 IPR009072 GO:0046982
Cca10g01427 269 MobiDBLite consensus disorder prediction 236 269 - -
Cca10g01427 269 Pfam Core histone H2A/H2B/H3/H4 67 170 IPR007125 GO:0003677
Cca10g01427 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 10 263 - -
Cca10g01427 269 MobiDBLite consensus disorder prediction 243 257 - -
Cca10g01427 269 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01427 Cca-Chr10 21123200 21124009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01427 86 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 3.65e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca10g01427 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01427 K08066 - gmx:100796987 410.223