Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01424 ATGGAACAATCAAGATTCCAAAACACGATTCTGTGCGCTAACATGGAACCTAGAAATGATGAATACCACCAGCCTGGGTCACAGTCAGTTTTGCAGGACCATCTGAATGGCATACATACCAGTAGAAGACCAGATGACCTCAACACATCAGAAGTTAAACCTGTACTTAATTACTCCATACAGACAGGTGAGGAATTTGCTCTTGAATTCATGAGAGATAGGGTGAATATCAGGAAGCCTGTATTATCAAATGCCAGCGAATCCAATTATACTCCAGGTTATATGGAACTGAAAGGCATTTTAGGCATCAGCCATGCAGGGTCTGAAAGTGGATCTGATATTTCTATGCTTTCAGTGGTTGATAAATATCCAAAAGAGTTTGATAGAATGAACACATCGTTACCTGGGGACAGAAGCAATTATGGGTCGATCCGATCAATGCCAAGAACTTCATTGAATCAGGACAATAGACAAGTTGTACCTGGATATGGCTCTTTTGGAGTTCATGATAGATCAATAATGATGAAATTTCTTTGCAGCTTTGGTGGCAGAATATTGCCACGACCATGTGATGGAAAGCTAAGGTATGTCGGGGGTCAAACACGCATTCTTCGAATAAGAAAGGATATATCTTGGCTGGAGCTCATGCAGAAAGCATTACAAATTTATAATCAGGTTCATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATCTGATGAAGATTTGCAGAATATGATGGAAGAATGCAATCATCTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAGGATGCTCAGTTTTGTCTCAGCAGCGTGGGTGATGATTCTGAGATCCAGTATGTTGTTGCCGTTAATGGCATGGACTTGGGATCAAGAAAAAACACAACCATGATTGGTGTCAGTTTCTCTGCAAATGATATAAATGAATTGGACAGGCAAAGTATTGACAAGGAGACTAGTAGAGTTGGTGTAGATTCCATCGCACAAGGCAATGCTCCCTTGACTAACAATTTTGACTCATCATTGAGCATTCAGTCTTCACTACCTGTGCTACCAACTTCCTCAAATTCTTATGAAAAATATCCACCGTTTTACGGTGATCAAATGATGCACCACGGGGAACCTAATGATCAATATCTCATTAATCATGGCTTTATTCCTTCTCATAAACCTGTCATCGGAGAAACTCCTATCATTATGCCTCCTCATATGCTCGTTAGTCAACAAGGGATTCTGAATGAAGGCCTTCCACCTCGTGGAATGCAAGTACAAAATTCAGAAATACCAGCAACATTGGCAAACAAGATTGTTGATGGTTCAATTCAACAAGGAAGTGGCACTGGGAAATCCACAGAATTACCATCTCCAGCTCCTGCACAACTGGTTAATGGTTACATGAAAAATAATTTTACTGAAGCATCGGTTGTTGTTACTGCACCAGAGGGACATTCATTGCATCCAGCAAAAATGGAAAAGCATCAGGATTATGAAGAAACTTCTACATCTAGCAGTGCATTTGGTCCTGCTTATGTTGATTCCCACTCCAATGCACCTGACTTGAGTTCTCTTCATCCTCCTCCTCTTCCTAAAAGAGTTTATTATTCAGAGAGAATTTCACGGGAACAAGTAGAGTTGCTGAATCGGTCCTCAAAATCAGATGATACACACAGTTCTCAGTTCCTTGTTTCAGATTTACTTTCCGACGTCAACCCACCAGATTCAGGTACAGAATCTGGTGACAAGTTACATGATGGAAATCTGCCTAATCTAACTGAGGAATTGGGTGTAACAGAAAATCTCTTGCATGCAGATGGCTATGCCATTGATAATGGAGCTGTGAAACACCAAATATACAAACAACTTCCTGATGCAAGCGGTCAGATGAAATCAAAGCTAACTGAGCATGTGAATCCTGAGTTGAAGCGGGTATTATCAGACAATGAAGGAAGCAAAGATGTGTTAAATAAGGATAATGTTGTTGCGTTGGAAATGGAAATTTATAGTAAAAATAACTATAACAAAACCCTGATTGATGAGACAAAAGCCAGTAAATCTGACTTGCCTAATTTGCACCAGGGTTCCTCTGGTAAGCACCTTGATGATCCAGCATCCAATCTTCCAGAGGTTGATTGGGGCGATGCCTCTGTGAAGGAGTCTAATGACGATATTAATGTGCAATCCTTACCTGTTAGTTTAAATGGGAGTGCAGCTATAAAAGATGATTCTGAAGAATTTCCTTCAAATGTTGTTTCCAAACAAGCACAAGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGATCCCTCTATTCTGCATCCATTAACCTCAGATGGAGCGGGCTTAAGTGTAAACATGGAAAATCGTGAACCTAAACGATGGTCATATTTTCAAAAATTGGCCCAAGAGGGGATTGATAATGTATCTCTTATGGATCAGGATCATCTTGGTTTTTCACCTGCAATAGGAAAAGTGGTTGGAGATAATAGGGATCAACATGTCACACCTTTAACAACTGATGAAAATTCTCTGAACCATGCCGAGTCCCACCTCGATTTTGTTGAAGAAAATATAAGAAACTTACATGGAAGGGTTGGAGCAGAAACCACTGAACGGAAGTCAGATTATGGTCATTCTCAAGTGAACAACACCGAAAGTATGCAATTTGATGCTATGATGGAACACATAAGAGCACAAGATTCAGAATATGAGGTTGGGAAGTTTGAAAAAAGGAATAGCAATCTACCTCCTCCTGATCCTTCTTTAGGAGAGTTTGATCCAAGTACCTTTCAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCCGGTACCTTTGGGACTGTATATCATGGAAAATGGCGAGGAACAGATGTTGCCATTAAAAGAATAAAGAAAATCTGCTTCACTGGTCGGTCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGAGAAGCTGAAATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGCAGGATGGACCAGGAGGAACAATGGCCACTGTTGCAGAGTACATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGTAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAATATTGTACACTTTGACTTAAAATGTGACAATTTGTTGGTAAACATGAAAGATCCTATGCGGCCTATATGCAAGGTTGGGGATTTTGGCTTGTCAAAAATTAAGCGAAATACCTTGGTTTCTGGTGGTGTGCGGGGGACTCTCCCTTGGATGGCACCAGAGCTGCTGAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACCGGTGAGGAACCATATGCCAATATGCACTATGGTGCAATCATAGGCGGAATTGTGAATAACACATTAAGGCCAACAATCCCAAATCATTGTGATCCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCAGCTAGGCCATCATTCACAGAAATTGCCAGTCGATTGCGCGTAATGTCGGCGGCCGCTAGCCAAACCAAAACTCAGGGCCAGAAGGCTTCCAAATGA 3759 0.4097 MEQSRFQNTILCANMEPRNDEYHQPGSQSVLQDHLNGIHTSRRPDDLNTSEVKPVLNYSIQTGEEFALEFMRDRVNIRKPVLSNASESNYTPGYMELKGILGISHAGSESGSDISMLSVVDKYPKEFDRMNTSLPGDRSNYGSIRSMPRTSLNQDNRQVVPGYGSFGVHDRSIMMKFLCSFGGRILPRPCDGKLRYVGGQTRILRIRKDISWLELMQKALQIYNQVHAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLEDREGSQKLRMFLFSMSDLEDAQFCLSSVGDDSEIQYVVAVNGMDLGSRKNTTMIGVSFSANDINELDRQSIDKETSRVGVDSIAQGNAPLTNNFDSSLSIQSSLPVLPTSSNSYEKYPPFYGDQMMHHGEPNDQYLINHGFIPSHKPVIGETPIIMPPHMLVSQQGILNEGLPPRGMQVQNSEIPATLANKIVDGSIQQGSGTGKSTELPSPAPAQLVNGYMKNNFTEASVVVTAPEGHSLHPAKMEKHQDYEETSTSSSAFGPAYVDSHSNAPDLSSLHPPPLPKRVYYSERISREQVELLNRSSKSDDTHSSQFLVSDLLSDVNPPDSGTESGDKLHDGNLPNLTEELGVTENLLHADGYAIDNGAVKHQIYKQLPDASGQMKSKLTEHVNPELKRVLSDNEGSKDVLNKDNVVALEMEIYSKNNYNKTLIDETKASKSDLPNLHQGSSGKHLDDPASNLPEVDWGDASVKESNDDINVQSLPVSLNGSAAIKDDSEEFPSNVVSKQAQGDILIDINDRFPREFFTDIFSKAVLEEDPSILHPLTSDGAGLSVNMENREPKRWSYFQKLAQEGIDNVSLMDQDHLGFSPAIGKVVGDNRDQHVTPLTTDENSLNHAESHLDFVEENIRNLHGRVGAETTERKSDYGHSQVNNTESMQFDAMMEHIRAQDSEYEVGKFEKRNSNLPPPDPSLGEFDPSTFQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREAEILSKLHHPNVVAFYGVVQDGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNMKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDPEWRTLMEQCWAPNPAARPSFTEIASRLRVMSAAASQTKTQGQKASK 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01424 1252 Pfam Protein tyrosine and serine/threonine kinase 971 1233 IPR001245 GO:0004672|GO:0006468
Cca10g01424 1252 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 87 1252 - -
Cca10g01424 1252 MobiDBLite consensus disorder prediction 516 537 - -
Cca10g01424 1252 MobiDBLite consensus disorder prediction 702 731 - -
Cca10g01424 1252 MobiDBLite consensus disorder prediction 507 545 - -
Cca10g01424 1252 PRINTS Tyrosine kinase catalytic domain signature 1052 1065 IPR001245 GO:0004672|GO:0006468
Cca10g01424 1252 PRINTS Tyrosine kinase catalytic domain signature 1089 1107 IPR001245 GO:0004672|GO:0006468
Cca10g01424 1252 PRINTS Tyrosine kinase catalytic domain signature 1160 1182 IPR001245 GO:0004672|GO:0006468
Cca10g01424 1252 PRINTS Tyrosine kinase catalytic domain signature 1204 1226 IPR001245 GO:0004672|GO:0006468
Cca10g01424 1252 Gene3D - 193 276 - -
Cca10g01424 1252 Pfam PB1 domain 191 274 IPR000270 GO:0005515
Cca10g01424 1252 Coils Coil 876 896 - -
Cca10g01424 1252 PANTHER SERINE-THREONINE PROTEIN KINASE 87 1252 - -
Cca10g01424 1252 Gene3D Phosphorylase Kinase; domain 1 963 1057 - -
Cca10g01424 1252 SUPERFAMILY Protein kinase-like (PK-like) 957 1232 IPR011009 -
Cca10g01424 1252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1095 1107 IPR008271 GO:0004672|GO:0006468
Cca10g01424 1252 Gene3D Transferase(Phosphotransferase) domain 1 1058 1252 - -
Cca10g01424 1252 CDD PB1_UP2 178 274 - -
Cca10g01424 1252 SMART serkin_6 970 1236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01424 1252 MobiDBLite consensus disorder prediction 582 605 - -
Cca10g01424 1252 CDD STKc_MAP3K-like 976 1233 - -
Cca10g01424 1252 SMART PB1_new 189 276 IPR000270 GO:0005515
Cca10g01424 1252 ProSiteProfiles Protein kinase domain profile. 970 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01424 1252 SUPERFAMILY CAD & PB1 domains 191 278 - -
Cca10g01424 1252 ProSitePatterns Protein kinases ATP-binding region signature. 976 1001 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01424 Cca-Chr10 21061819 21072526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01424 48 580 MAP Kinase Kinase Kinase AT1G16270 38.376 1.11e-89 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Cca10g01424 PK_Tyr_Ser-Thr 4.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01424 - - gmx:100799639 2207.95