Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01418 ATGGCATCCGAGCGTCATTCTTCCGTCTGGAGTGGTAGCAATTTCTTTCCCATCTGTGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCATGCCAAATTGGGCATGGCAAGTCCAAGGTCATTACGGCGGGGCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATAGTCAAATTCATTTTCCAAACATGACATTCCTCCACCCACATTTTCCACCATCAATCACTAACTCCAGCACCGTATCCACTTTCTACTGCGATGGTGGCAGGATCAAGCAAATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGGAAGTTCCCAACACTTGTGACTCACCAAGAAACTCTCGAGTCAGAGGTTAATGAGAGTAAGGCTATTCCAGCTTAA 438 0.4772 MASERHSSVWSGSNFFPICEETAIEKRMEAGPMPNWAWQVQGHYGGATLTPPFSTAASSGFPSTIIPSAADSQIHFPNMTFLHPHFPPSITNSSTVSTFYCDGGRIKQIPRLLGPGLNKAGKFPTLVTHQETLESEVNESKAIPA 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01418 145 ProSitePatterns Ribosomal protein L1 signature. 106 125 IPR023673 -
Cca10g01418 145 Gene3D - 92 143 IPR016095 -
Cca10g01418 145 SUPERFAMILY Ribosomal protein L1 96 141 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01418 Cca-Chr10 20790978 20792815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01418 99 142 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 77.273 2.85e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01418 K09284 K02865 ccaj:109791696 218.779