Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01397 ATGGCACTAAGGACGTACTTCAACCGGGAAACTCTTCAATTTCCCATCTCAAAAACAAACACCTTTCATGAAAGCATGCCAGAAGAAGTATCAGCACCAAACCTCAACCACTTTTTTCCGTATTCAGATGAAAGCTTCTTCCTTTCAAACCCACTTTTTAATAACTATTTTGACCCAACAGGTGATTTTGTCTTCCCTCCAGAGATCTACCCTCCTTATGATCCCATCATTCCCCTCACTCGTCATGATATTTTCCCAACTCACGAAGATTACAATCTTCTCCCATGTCCCAAAAGCCAAAAGTATAACTATGAACCTGAACCTCAAGAGTTTATTACACCATCAGTACCGTCCACTTTCTTAGAAGGGTTTTTTATGCCTTATGATAATTGTTCCTCCTTGCAAGGAGAAGAACAGCAACATGAACTCTTCTATAATGTTCCACAACATGATACTTGTGTGGATCTTCCTTGGTGTGAGAAGAAAGATAAAGAGAGAAACATATCTCCACAGAGCATAGCAGCAAGAGAAAGGAGAAGAAAGATCACTGTGAAGACACAGCAACTCGGAAAATTGGTTCCTGGTGGACCAAAGATGAACACGGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAACTACCTTCAAGCACAAGTTGGGATGCTTGAACTCATGAAGTCTCTCGAGGTAATTGAAGAAAAAACAGCACCTCCTTCTGAAATTCTACACGATCTTGTTGTTTCTCCCGTTGTTCAAGAGAAATTGTACACTGAGGAAATGTGTTTTGTTCCAAAAGAAATTGTCACCACTTTGACAAATCACGAGGATGTTAAATCAAGCCCTACCATCGTTGAGGATCTTAAACAGCTGATTGGGACAGACATTGAGACGAAAGCTAAGTAA 903 0.4053 MALRTYFNRETLQFPISKTNTFHESMPEEVSAPNLNHFFPYSDESFFLSNPLFNNYFDPTGDFVFPPEIYPPYDPIIPLTRHDIFPTHEDYNLLPCPKSQKYNYEPEPQEFITPSVPSTFLEGFFMPYDNCSSLQGEEQQHELFYNVPQHDTCVDLPWCEKKDKERNISPQSIAARERRRKITVKTQQLGKLVPGGPKMNTAEMLHAAAKYVNYLQAQVGMLELMKSLEVIEEKTAPPSEILHDLVVSPVVQEKLYTEEMCFVPKEIVTTLTNHEDVKSSPTIVEDLKQLIGTDIETKAK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01397 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 286 - -
Cca10g01397 300 Gene3D - 163 235 IPR036638 GO:0046983
Cca10g01397 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Cca10g01397 300 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983
Cca10g01397 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 224 IPR036638 GO:0046983
Cca10g01397 300 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 286 - -
Cca10g01397 300 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01397 Cca-Chr10 20203027 20204839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01397 93 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 36.444 1.82e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g01397 HLH 3.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01397 - - ccaj:109818800 482.256