Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01395 ATGCCAGAAGAAGTATCAGCACCAAACCTCAACCACTTTTTTCCGTATTCAGATGAAAGCTTCTTCCTTTCAAACCCACTTTTTAATAACTATTTTGACCCAACAGGTGATTTTGTCTTCCCTCCAGAGATCTACCCTCCTTATGATCCCATCATTCCCCTCACTCGTCATGATATTTTCCCAACTCACGAAGATTACAATCTTCTCCCATGTCCCAAAAGCCAAAAGTATAACTATGAACCTGAACCTCAAGAGTTTATTACACCATCAGTACCGTCCACTTTCTTAGAAGGGTTTTTTATGCCTTATGATAATTGTTCCTCCTTGCAAGGAGAAGAACAGCAACATGAACTCTTCTATAATGTTCCACAACATGATACTTGTGTGGATCTTCCTTGGTGTGAGAAGAAAGATAAAGAGAGAAACATATCTCCACAGAGCATAGCAGCAAGAGAAAGGAGAAGAAAGATCACTGTGAAGACACAGCAACTCGGAAAATTGGTTCCTGGTGGACCAAAGATGAACACAGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAACTACCTTCAAGCACAAGTTGGGATGCTTGAACTCATGAAGTCTCTCGAGGTAATTGTGATGATATGTCATGGAACCGCTTAG 645 0.4093 MPEEVSAPNLNHFFPYSDESFFLSNPLFNNYFDPTGDFVFPPEIYPPYDPIIPLTRHDIFPTHEDYNLLPCPKSQKYNYEPEPQEFITPSVPSTFLEGFFMPYDNCSSLQGEEQQHELFYNVPQHDTCVDLPWCEKKDKERNISPQSIAARERRRKITVKTQQLGKLVPGGPKMNTAEMLHAAAKYVNYLQAQVGMLELMKSLEVIVMICHGTA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01395 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Cca10g01395 214 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 14 203 - -
Cca10g01395 214 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 203 - -
Cca10g01395 214 Pfam Helix-loop-helix DNA-binding domain 149 191 IPR011598 GO:0046983
Cca10g01395 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 199 IPR036638 GO:0046983
Cca10g01395 214 SMART finulus 147 196 IPR011598 GO:0046983
Cca10g01395 214 Gene3D - 138 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01395 Cca-Chr10 20194376 20195020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01395 68 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 38.217 2.69e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g01395 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01395 - - ccaj:109818800 449.129