Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01393 ATGACGACACTAAGCACACCCTTCAACTGGCACACTCTTGAATTTCCCAGTTCAGAAACAAACACTTTTCATGAAGAAGTAGCAGCACCAAACCTGCAGAACCTTTTTCCCTACTCGGATGAAAGCTTCTACCTTTCAAATCCAATTTTTGAGAACTATATTGACCCCAGTCACTTTCTTTACCCTTCGGAGGTTTACCCTCCTTATGATCCTTTCGTTCCATTCACCTATCATGACATTTTTCCAACTCATGAAGATCACACAGTCTTCTCCCATGTCCAAAAGGCCAAAAGTGCTGCTATGATAATACGTGCTCCTTGCAAGGAGAGGAAGTGCAACAAGAAATTTTCTATGAGATTTCACAACTTGAGCATAGCAGCaagagaaaggagaaaaaagatcagcgagaagactcaagagCTTGGGAAATTGGTTCCTGGTGGACCAAAGATGAACACAGCAGACATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGATCTCATTCGAGAAAGATAAAGCAACACCTCCTTATGAAATTCTACACAATCTGATTGTTTCTCCCTTGGTTGAAGAGAAGTTGTACACTGGGGAAATGTGTTTTGCTCTAAAAGAAATTGTCACCACTTTGACAAATCATGAGGATGTTCAATCAAGACCTACCATCGCTGAGGATCTGGATCTTAAACAGCTGATTGGGACAGACATTGAGGAGAAAGCAAAGCAAGAATAA 765 0.3922 MTTLSTPFNWHTLEFPSSETNTFHEEVAAPNLQNLFPYSDESFYLSNPIFENYIDPSHFLYPSEVYPPYDPFVPFTYHDIFPTHEDHTVFSHVQKAKSAAMIIRAPCKERKCNKKFSMRFHNLSIAARERRKKISEKTQELGKLVPGGPKMNTADMLHAAAKYVKYLQAQVGMLELMISFEKDKATPPYEILHNLIVSPLVEEKLYTGEMCFALKEIVTTLTNHEDVQSRPTIAEDLDLKQLIGTDIEEKAKQE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01393 254 SMART finulus 124 173 IPR011598 GO:0046983
Cca10g01393 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Cca10g01393 254 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 115 233 - -
Cca10g01393 254 Gene3D - 119 179 IPR036638 GO:0046983
Cca10g01393 254 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 115 233 - -
Cca10g01393 254 Pfam Helix-loop-helix DNA-binding domain 127 168 IPR011598 GO:0046983
Cca10g01393 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 178 IPR036638 GO:0046983
Cca10g01393 254 CDD bHLH_AtbHLH_like 124 175 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01393 Cca-Chr10 20180752 20182042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01393 136 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 46.602 4.52e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g01393 HLH 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01393 - - ccaj:109818799 521.931