Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01384 ATGGCCTCTGCTGCCACCGCCACCACTCTCTTCTCCCACAACCCCATGTTCCCCACTGAACACCACTCTCTCTCTCCCTCTCCAACCATTCCCAAATCCTTCACTGGCCTCTGCAAGCCCTTCCATTCTAGGGTCCCCACTTCCTTCCCCTTCTTCCATTGCAGGAGACCGAAGTTCTTTGTAAGAGCTACTGTTATAAAGTGGAGATGTCCAAAGCAAACACTCCCTCCTAATTGTGATACCGGTTTCCAAAAGAAACTCCTGTATCTGGAATCTATTGGTATCGACTCTTTCTCACTTATTGAAAACCACCCGACGCTGATCACCACCTCTCTTGGTGACATAAGATCCACCGTGGAATACATCACCTCCATGGATTTCACCGCAATTGAGTTTCGGCGAATGGTTGGCATGTGCCCCGAGATCCTGACCACCCCAGTCTCAGACCTCATTCCAGTCTTCACCTTCCTTCATCGCGAGGTTCATGTGCTTGGCTCGGATATCAAGCGGGTCATAAATCGTCGTCCTAGGTTGCTTGTCTGCAGTGTTAGTAAGCAACTTCGTCCTACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACTGATTTGCTATCCTGTAGTGTTGAAGAAAAGTTCATGCCCAGGATTGATTACTTTGAGAATATTGGGTTTTCGCGCCGCGATGCAACTTCAATGTTTCAAAGGTTTCCTGCACTCTTTTGTTATAGTATTAAAAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGAAAGAATTCCCACAGTATTTCTCATTTAGCCTAGAGAATAGAATTAAGCCTAGGCATAAAATGTGTGTAGAAATGGGTGTGTGTTTTCCTCTCCCTGCCTTGTTAAAAACCAATGAAGTGAGATTTCAAAGTAGATTAGATGTATTTGTAAATTCTTCTACACCCTTGAAAACATCTCCTCTGTGGTGTGCTGGCTGTGATGTTAATGAAGTATAG 1029 0.447 MASAATATTLFSHNPMFPTEHHSLSPSPTIPKSFTGLCKPFHSRVPTSFPFFHCRRPKFFVRATVIKWRCPKQTLPPNCDTGFQKKLLYLESIGIDSFSLIENHPTLITTSLGDIRSTVEYITSMDFTAIEFRRMVGMCPEILTTPVSDLIPVFTFLHREVHVLGSDIKRVINRRPRLLVCSVSKQLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRIDYFENIGFSRRDATSMFQRFPALFCYSIKNNLEPKYSYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKMCVEMGVCFPLPALLKTNEVRFQSRLDVFVNSSTPLKTSPLWCAGCDVNEV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01384 342 Pfam mTERF 167 314 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 Pfam mTERF 80 161 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 Gene3D Transcription termination factor 3, mitochondrial 139 322 IPR038538 -
Cca10g01384 342 SMART mt_12 98 128 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 SMART mt_12 235 267 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 SMART mt_12 201 230 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Cca10g01384 342 PANTHER OS03G0360600 PROTEIN 71 326 - -
Cca10g01384 342 PANTHER CGI-12 PROTEIN-RELATED 71 326 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca10g01384 mTERF 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01384 K15032 - gmx:100794678 642.499