Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01381 ATGGGAAGAGGAAGAGCACCATGCTGTGATAAGAGTCAAGTTAAGAGAGGTCCTTGGAGCCCTTCAGAAGATCTTAAGCTCATTGCTTTCATCCAAAAGTATGGCCATGAAAATTGGCGTGCTCTCCCAAAACAAGCAGGCCTTTTGCGATGTGGGAAAAGTTGTCGTCTGAGATGGATCAATTACCTTCGGCCTGATGTGAAGAGAGGTAGTTTTACACTGGAGGAAGAGGAAACCATAATAAGGCTACACAAGGCCTTGGGAAATAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAATACCCACTTAAAGAAAAGATCGGTTGCAAAAAAAAGCTTAAATTCAAGTGCAGATGAGTCCAAGCCAGATTCATCAATAACTTCCTCCTTTTCCTCTTCATCTGAATCATTTTTCTCAAATGAGAGACCAAATTCACCAAAGACCACAACACTTGGTAGTGAATTTAATGACCAACCATCACAAGAGACAGATAAAATTGAGCAAGATTTAGAGAAACAAGTATCCAATGAATTTATCATCATCACTGAGAATCCAAAAGAGTCATCAGTTTCATTATCATCAATTGAGTCAAATATTGCAACCTCAAGCCAGGATGTTGCATGCAAAGCAGAACAACTATTGGCTTCTCCATTATCCTACCTAGGATCCTATGATTTTGGTAGTATATTGGAAGAGGTGGATAAACCAAACCACCTGTTTGAAATACCATGGGAATCAGATTATGATTTTTGCAAGTTGTTAGATGACGATAACTTTGGATCTTTTCAATCAAATGAAGTCCAATTAAGTGAGTTCCCAGCAAGCCAAAACGTTATACTTGAAGAAGAGATAGTTCAAGATGTTAAAGTCACACAGTGGCCCCATGATTTTGAGAATAAGTTTGGAGTTGTAGGTGAAATAAAGGAGTCAAACAAGGATCATTTCTTACCAAAGAATTATGAAGTTGGGCCAGAAATAGACCACACTCAGACATTTGATCTCGATGACATGAGAACACCAGAAGCTGAATTAGACTTTGGTTACATTCAATTATGGCCATCTTGGTCTTAG 1104 0.3904 MGRGRAPCCDKSQVKRGPWSPSEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGSFTLEEEETIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRSVAKKSLNSSADESKPDSSITSSFSSSSESFFSNERPNSPKTTTLGSEFNDQPSQETDKIEQDLEKQVSNEFIIITENPKESSVSLSSIESNIATSSQDVACKAEQLLASPLSYLGSYDFGSILEEVDKPNHLFEIPWESDYDFCKLLDDDNFGSFQSNEVQLSEFPASQNVILEEEIVQDVKVTQWPHDFENKFGVVGEIKESNKDHFLPKNYEVGPEIDHTQTFDLDDMRTPEAELDFGYIQLWPSWS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01381 367 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Cca10g01381 367 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Cca10g01381 367 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Cca10g01381 367 MobiDBLite consensus disorder prediction 124 170 - -
Cca10g01381 367 Gene3D - 70 139 - -
Cca10g01381 367 PANTHER - 1 360 - -
Cca10g01381 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Cca10g01381 367 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Cca10g01381 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 360 - -
Cca10g01381 367 CDD SANT 71 114 IPR001005 -
Cca10g01381 367 MobiDBLite consensus disorder prediction 121 178 - -
Cca10g01381 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Cca10g01381 367 SMART sant 15 65 IPR001005 -
Cca10g01381 367 SMART sant 68 116 IPR001005 -
Cca10g01381 367 CDD SANT 18 63 IPR001005 -
Cca10g01381 367 Gene3D - 16 68 - -
Cca10g01381 367 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01381 Cca-Chr10 19865233 19868141 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01381 1 274 MYB Transcription Factor Family AT1G79180 46.580 1.53e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g01381 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01381 K09422 - gmx:100101836 553.903