Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01379 ATGGGGAGAGGAAGAGCACCATGTTGTGATAAGAGTCAAGTTAAGAGAGGTCCTTGGAGCCCTTCAGAAGATCTTAAGCTCATTGCTTTCATTCAAAAGTATGGCCATGAAAATTGGCGTGCTCTCCCAAAACAAGCAGGGCTTATGCGGTGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGAAATTTTACACAAGAGGAAGAGGAAACCATAATAAGGTTACATAAGGCCTTGGGAAACAAGTGGTCAAAGATTGCATCATGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACATAAAGAAAAGAAAAAGTTCAAATTCAAGTGCACATGAATCCAAGCCAAAGTCATCAATAACTTCTTCCTCTTCATCTTCATCCGAATTATTTTTCTCAAATGAGACACCGAATTCGCCAAAGACCACAACACTTGGTGATGAATTTAATGACCAAGCATCACAAGTGACAGATAAAACAGAGCAAGATTCAGATAAACAAGTATCAAATGAGCTTATTATCATCTCTGAGAGTCCAAAAGAGTCATCAATTTCATTATCATCTATTGAGTCAAATATTGTAACCTCAAGCCAAAATGTTGCATACAAAGCAGAACAACAATTGGCTTCACCATTATCCTACCTAGGACCCTATGATTTTGGTAGTATATCAGAAGAGGTGGATAAACCAAACCACCTGTTTGAAATACCATGGGAATCAAATTGTGATTTTTGGAACCTGTTAGATGATGATAATCTTGGGTCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTCCCCAGCTAGCCAAAATATTATTCTTGGAGAAGAGATTGTTGATGATGTTGAAGCTAAGATGTGGTCCCATGATTTTGAGAATGAGTTTGGATTAGTAGGTGAGATAAATGAGTCAAACAAGGATCATTTCCTACCAAAGAATTGTGCAATTGAGCCAAAAATGGATCACACTCAAACATTTGATTTCGACGACATAACAAGACCAGAATCTGAATTAGACTTTAGTTATATTCAATTGTGGCCATCTTGGCCTTAG 1092 0.3819 MGRGRAPCCDKSQVKRGPWSPSEDLKLIAFIQKYGHENWRALPKQAGLMRCGKSCRLRWINYLRPDVKRGNFTQEEEETIIRLHKALGNKWSKIASCLPGRTDNEIKNVWNTHIKKRKSSNSSAHESKPKSSITSSSSSSSELFFSNETPNSPKTTTLGDEFNDQASQVTDKTEQDSDKQVSNELIIISESPKESSISLSSIESNIVTSSQNVAYKAEQQLASPLSYLGPYDFGSISEEVDKPNHLFEIPWESNCDFWNLLDDDNLGSFQSNEVQLGESPASQNIILGEEIVDDVEAKMWSHDFENEFGLVGEINESNKDHFLPKNCAIEPKMDHTQTFDFDDITRPESELDFSYIQLWPSWP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01379 363 PANTHER - 1 318 - -
Cca10g01379 363 Gene3D - 70 141 - -
Cca10g01379 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Cca10g01379 363 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Cca10g01379 363 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Cca10g01379 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Cca10g01379 363 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Cca10g01379 363 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Cca10g01379 363 Gene3D - 16 68 - -
Cca10g01379 363 SMART sant 15 65 IPR001005 -
Cca10g01379 363 SMART sant 68 116 IPR001005 -
Cca10g01379 363 MobiDBLite consensus disorder prediction 125 160 - -
Cca10g01379 363 CDD SANT 71 114 IPR001005 -
Cca10g01379 363 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Cca10g01379 363 CDD SANT 18 63 IPR001005 -
Cca10g01379 363 MobiDBLite consensus disorder prediction 114 160 - -
Cca10g01379 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01379 Cca-Chr10 19835405 19838358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01379 1 310 MYB Transcription Factor Family AT1G79180 42.529 4.41e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g01379 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01379 K09422 - gmx:100101836 549.28