Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01375 ATGAACACCGATTGCCCTTGTGGGGTTGAGCACGCTCCAGCCCCACTCGCGTGCCACCACCACCACCATGAAGCACTTGATCCGCCGCCTCTCCCGCGTCGCCGACTCCTCCGCGCACGCTGCCGCCGCGCCCCCAAGATCCGGCGCTCCTCCTCCGCCGCGGTGGTGCCGGAGGGGCACGTGCCGATCTACGTGGGCGACGAGATGGAACGGTTCGTGGTGTGCGCGGAGCTTCTCAACCACCCCGTGTTCGTGAAGCTTCTGAACGAGTCCGCGCAGGAGTATGGGTACGAGCAGAAAGGGGTTCTGAGGCTACCGTGCTGCGTCCTCGTCTTCGAGCGCGTGCTCCACGCGCTCCGCCTCGGCCTCGACGCGCGTGATGTCGCAGAGATTGTTGGCTTCTCGTCCGAGGAGTGA 417 0.6619 MNTDCPCGVEHAPAPLACHHHHHEALDPPPLPRRRLLRARCRRAPKIRRSSSAAVVPEGHVPIYVGDEMERFVVCAELLNHPVFVKLLNESAQEYGYEQKGVLRLPCCVLVFERVLHALRLGLDARDVAEIVGFSSEE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01375 138 Pfam Auxin responsive protein 41 119 IPR003676 GO:0009733
Cca10g01375 138 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 46 133 IPR003676 GO:0009733
Cca10g01375 138 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR72 46 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01375 Cca-Chr10 19441686 19442940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01375 51 119 Calmodulin-binding Proteins AT2G24400 40.580 7.26e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01375 K14488 - ccaj:109818830 198.749