Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01370 ATGGTGGAGGCAACATGGATCTTTCCACTTTTGATATTAACACTTGAATTATCAGCATCAGGGGTGAATTCTGCGAATTTCACTTTCGTTAACCAATGTAATTACACAGTGTGGCCAGCTGCTATCAGTGCTATGGATAACAGAACAGGCTTTGTTTTGAGAACCAAAGAATCTTTCACCGTCGCAGCACCCACCAGATGGACCGGCCGTTTCTGGGGTCGCACCCTCTGCACCACCGACACAGCCACCGGAAAATTCTCATGCATCACCGGCGACTGCGGCTCCGGCGAGGTCCAATGCAACGGAAATGGAAGTTCACCACCAGTTACACTCGTAGAATTTACAACAGACAGCAATGGCATGGACTTCTACGATGTGAGCTTGGTGGATGGGTTTAACGTTCCGGTAGCGGTGGTTCCCGGCGACAGCAAGTGCAAGAGCACAGGGTGTGCGGTGGATTTGAACCAAGTGTGTCCTACAGAAATGAAGGTACAGGAAAAGGGACAAGTAGTGGCATGTCAAAACGCTTGTGCCAACATAAACAAAGACTTTTATTGTTGCATAGGGAATTATTCTGGTGCGGACAACTGCAAGCCAAGCCTGTACGCCAAAGTATTCAAGGAAGCGTGTCCACAAGCTTATAGCTACGCGTTTGACGATTCTACTAGTACCTTCACATGTTCCAATCCCACGAATTACAACATTGTCTTTTGTCCTACATCTAACAATGCCAGCCGAAGGGTTGGTGACTCACTCATAGCCGGCAATGGGACATCTCAATGGCTTTCTCCTTCAGGTGATTTTGCATTTGGGTTCTACCAACTTCCGAATGAGCTTTTCTTATTGGCTATATGGTATCACAATATGCCAAATAAAACCATTATTTGGTATGCAAATGGAGACAACCTTGCTCCAACAGGATCAAGGTTAGAACTAAATGACTCTCGTGGACTAGTACTTAGCAACCCCCAAGGTTTAGAGCTGTGGAGATCAAATTTTACATCAGGTATAGTTTTTAATGGTCTAATGAATGATGATGGAAATTTCCAACTATTAGATCAAAATTTTGTGCCAATATGGGAAAGTTTTACTCATCCAACTGACACATTGGTACCTACTCAAGTAATGGAGTTAAATGGAGAACTTTCTTCTCGACAAGGAGAGTTAAACTTCTCACGTGGAAGGTTTAAACTTCTTCTACAAGAGGATGGGAATCTTGTGTTCAACCTTATCAATTTGCCTAGCAACTATAGTTACGAGCCTTACTATGATATTGGCACTGCTGACGCTAGGAACCAAACAAATGTTGGCATGAAATTGATATTTGACAAATCAGGCTTCTTATACATATTGAAAAAAAGTGGGGAGAAGTTTAGTCTCATCAAGCCAATTGAGACAGTCTCTACTACTGACTTCTTCTACAAAGCAACAATCAATTATGATGGAGTTTTTACCATATCATATTACCCCAAAGATCCAAAAAATGGACAAGGATGGATCACTTCAAAGACTATACCAGAAAATATTTGTTTGAACTCTACATTCACAAATAGTGAAGGTATTTGTGGGTTTAATAGCATATGCAACCTTGAAAAAGACCAAAGGCCAATGTGTAAATGCCCGGAGGGATATTCTTTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAGATTTCCAAGTCATTTGTCAAGGAGGTGGGCACCAGGGTTCACAAGATGATTTGTATATAATGAAGGAGTTGCAAAACACTGATTGGCCTAAATCTGATTATGAAACATTAAGTCCTATTGGTCTAAAAGAATGTACAAAGTCTTGTTGGCAAGATTGCTTGTGTGTGTTGGTTGCTTTTAGTGGAAATTCTTGTTGGAAGAAGAAGTTGCCACTAACAAATGGGAGAAGTGATCAGAGACTAAATGCAACTTCTATCATAAAGTTGATGAAAAATAATGACCCAAAAGAGAAGAAAGATCACGCTCCCTTGATCATTGTGATATCAGTTCTTTTGGGAATCTCTGTATTGGTCATTTTAATGTTGATTGGTGCAATATGTTTTGGTTTCCCTTACAATTGCAAAAAGATCAAAAATAGTAGAACCAACAACAGTGTTGTTGGGAAAAATTTACGTAATTTTACCTTCAAGGAACTTATAGAAGCAACAAGCAACTTTAGAGAAGAATTAGGAAGAGGATCTTTTAGCATTGTCTATAAGGGAACAATAGAGATGACTAGTGTGGCTGTTAAGAAATTAGACAAGTTGTTTCGAGACAATGATAAGGAATTTCAGACTGAAGTGAATGTAATAGGACAAACTCATCATAGGAACCTAGTTCGTCTACTTGGATACTGCAATGAAGGACAACACAGAATTCTAGTATATGAGTTTATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACCCCTTTAAAATCAAATTGGGGCCAACGGTTCGACATTGCCCTTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAAATCAACCATTGTGACATAAAGCCTCAAAATATACTTTTAGATGATCAATATAATGCTAGAATTTCAGATTTTGGCTTAGCAAAGCTGTTATTGATCAACCAAAGCCACACTGAAACTGGAATTAGAGGAACAAAAGGGTACGTTGCACCAGATTGGTTTAGAAGTGCACCAATCACAACTAAGGTTGACACTTATAGTTTTGGTGTGGTGCTTCTAGAGATCATTTGTTGTAGGAAGAATGTAGAAAAAGAGCCTGATAATGAAGAAAAAGGGATATTAACTGATTGGGCATATGATTGCTACATAGCTAGAAGATTACACATTCTTCTAGAAAATGATGATGAGGCTATTAATGATATAAAAAGCTTTGAAAAACTTGTGATGATTGCTATTTGGTGCATTCAAGAAGACCCATCTCGAAGGCCGACAATGAAGAAGGTTTTGCAGATGCTAGAAGGAATTGCTGAAGTTTCAATACCGCCAAGTCCTTACCTTCATGGTTCTGTTAGCTAA 3027 0.3958 MVEATWIFPLLILTLELSASGVNSANFTFVNQCNYTVWPAAISAMDNRTGFVLRTKESFTVAAPTRWTGRFWGRTLCTTDTATGKFSCITGDCGSGEVQCNGNGSSPPVTLVEFTTDSNGMDFYDVSLVDGFNVPVAVVPGDSKCKSTGCAVDLNQVCPTEMKVQEKGQVVACQNACANINKDFYCCIGNYSGADNCKPSLYAKVFKEACPQAYSYAFDDSTSTFTCSNPTNYNIVFCPTSNNASRRVGDSLIAGNGTSQWLSPSGDFAFGFYQLPNELFLLAIWYHNMPNKTIIWYANGDNLAPTGSRLELNDSRGLVLSNPQGLELWRSNFTSGIVFNGLMNDDGNFQLLDQNFVPIWESFTHPTDTLVPTQVMELNGELSSRQGELNFSRGRFKLLLQEDGNLVFNLINLPSNYSYEPYYDIGTADARNQTNVGMKLIFDKSGFLYILKKSGEKFSLIKPIETVSTTDFFYKATINYDGVFTISYYPKDPKNGQGWITSKTIPENICLNSTFTNSEGICGFNSICNLEKDQRPMCKCPEGYSLIDSNNMYGGCIPDFQVICQGGGHQGSQDDLYIMKELQNTDWPKSDYETLSPIGLKECTKSCWQDCLCVLVAFSGNSCWKKKLPLTNGRSDQRLNATSIIKLMKNNDPKEKKDHAPLIIVISVLLGISVLVILMLIGAICFGFPYNCKKIKNSRTNNSVVGKNLRNFTFKELIEATSNFREELGRGSFSIVYKGTIEMTSVAVKKLDKLFRDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKSNWGQRFDIALGIARGLVYLHEECCTQINHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITTKVDTYSFGVVLLEIICCRKNVEKEPDNEEKGILTDWAYDCYIARRLHILLENDDEAINDIKSFEKLVMIAIWCIQEDPSRRPTMKKVLQMLEGIAEVSIPPSPYLHGSVS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01370 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Cca10g01370 1008 Pfam D-mannose binding lectin 293 380 IPR001480 -
Cca10g01370 1008 ProSiteProfiles Bulb-type lectin domain profile. 237 364 IPR001480 -
Cca10g01370 1008 Gene3D - 247 367 IPR036426 -
Cca10g01370 1008 ProSiteProfiles Thaumatin family profile. 24 241 IPR001938 -
Cca10g01370 1008 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 162 1008 - -
Cca10g01370 1008 SMART serkin_6 722 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01370 1008 SMART tha2 27 239 IPR001938 -
Cca10g01370 1008 SUPERFAMILY Protein kinase-like (PK-like) 704 990 IPR011009 -
Cca10g01370 1008 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cca10g01370 1008 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Cca10g01370 1008 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Cca10g01370 1008 PRINTS Pathogenesis-related protein signature 229 238 IPR001938 -
Cca10g01370 1008 CDD TLP-PA 27 238 - -
Cca10g01370 1008 CDD B_lectin 262 366 IPR001480 -
Cca10g01370 1008 CDD STKc_IRAK 728 992 - -
Cca10g01370 1008 Pfam Thaumatin family 31 239 IPR001938 -
Cca10g01370 1008 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Cca10g01370 1008 Gene3D Phosphorylase Kinase; domain 1 687 796 - -
Cca10g01370 1008 ProSitePatterns Protein kinases ATP-binding region signature. 728 750 IPR017441 GO:0005524
Cca10g01370 1008 Gene3D - 368 504 IPR036426 -
Cca10g01370 1008 SMART blect_4 251 366 IPR001480 -
Cca10g01370 1008 ProSiteProfiles Protein kinase domain profile. 722 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01370 1008 Gene3D Transferase(Phosphotransferase) domain 1 797 997 - -
Cca10g01370 1008 Pfam Protein kinase domain 725 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01370 1008 SUPERFAMILY Osmotin, thaumatin-like protein 26 239 IPR037176 -
Cca10g01370 1008 SUPERFAMILY alpha-D-mannose-specific plant lectins 280 426 IPR036426 -
Cca10g01370 1008 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 162 1008 - -
Cca10g01370 1008 Gene3D Thaumatin 25 239 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01370 Cca-Chr10 19256408 19261254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01370 697 991 Receptor kinase-like Gene Family AT1G60800 41.914 1.63e-68 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca10g01370 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01370 - - gmx:100796619 1602.8