Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01357 ATGGGTGTGAACCAAGATTTCAACAAGgatgatcatgaatatgtggatgatgatgatgTTCCACTTCCGGGGTTCCGATTCCACCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGTATTGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAACAAGTGCCACTGGAGGAGAGAAAGAGGGGTACTTCTTTTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCCACTGGCATAGACAAGCCTGTGTACTCACATGGAGGAGAAGGCAATGACTGCATTGGACTCAAGAAAACACTTGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCTAACACAGACACCAACACAAACCTTCCCAACTCCAAGACTTATGTAGATATCCCCCAAGAAGCTGAAATTTGGACACTGTGTAGAATTTTCAAGAGAAATGTGTCACAGAGGAAGCACATGCCAGAGTTGAAACACTCATCTGCTAAGCGCCATTCCATTCATGACAAGAGCTCGAGGATGAACAATGTGGAGTTTCTCACTAACCAAGAAGAAGCATATATCAACTTTGGTGACCACTATCACAATGAGAAGAAACCAATCATTAGTTACACCAACAGTGATCAAAGGAATAATAATCAGTTTCATGTGAGTCAGTTTTATTCTCCAGTGCCACAGCAACCTCAACTACTAACTGCACCATCTTCAAACTTTTGGATTAATCCTGTTGGGAACGACTTCTTCACGTTTGATAATTGGGATGAGCTTGGATCTGTAGTGAAATTTGCTGTTGATTCGCCTAGCATGTAG 927 0.4164 MGVNQDFNKDDHEYVDDDDVPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTNLPNSKTYVDIPQEAEIWTLCRIFKRNVSQRKHMPELKHSSAKRHSIHDKSSRMNNVEFLTNQEEAYINFGDHYHNEKKPIISYTNSDQRNNNQFHVSQFYSPVPQQPQLLTAPSSNFWINPVGNDFFTFDNWDELGSVVKFAVDSPSM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01357 308 Pfam No apical meristem (NAM) protein 23 151 IPR003441 GO:0003677|GO:0006355
Cca10g01357 308 Gene3D NAC domain 30 189 IPR036093 GO:0003677|GO:0006355
Cca10g01357 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 306 - -
Cca10g01357 308 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 13 306 - -
Cca10g01357 308 SUPERFAMILY NAC domain 21 185 IPR036093 GO:0003677|GO:0006355
Cca10g01357 308 ProSiteProfiles NAC domain profile. 21 185 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01357 Cca-Chr10 18978648 18981400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01357 18 195 NAC Transcription Factor Family AT5G39820 58.639 2.63e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g01357 NAM 7.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01357 - - gmx:100790471 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01357 10 18978648 18981400 Cca10g01357 10 18978648 18981400 ECH